Gene Lcho_1743 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1743 
Symbol 
ID6163280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1862577 
End bp1863146 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content68% 
IMG OID641664503 
Producthemerythrin HHE cation binding domain-containing protein 
Protein accessionYP_001790775 
Protein GI171058426 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.000243093 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGAACG GATCCCTGCA AGCACTCCAC GCCCGAGCCA GCTCGCGCGC CCGACCCGAA 
ACCAGCGAGG CGCTGTCACC GATGGAGGTG CTCGACGCCG ACCATCGACA GATGGTCGTC 
ATGCTGGCCA AGCTGGGCTC GCTGGTCGAC GCCGGCAATG ACCTGTCGGC GCAGCCGATG 
CGCGCCCTGG CCCTCGAGGT GCACGGCTTT TTCGGCGAAC ACGCGCGCCG CCACCACGCC 
GACGAAGAAC AGCACATCTT CCCCGACCTG CTCAACAGCA GCGACGCCAG CGTGCGTGCG 
CACGCCGAGC GCCTGCAGCA GGATCACCGC TGGCTCGAGC AGGACTGGCT CGAACTCGCA 
CCCAGCATCT CGTGCGTGGC CGACGGCATC GGCGGCATCG ATGAAGACAT GTTGCGCGAG 
GCGATCGGGA TCTTCACCGC GCTCTACCAG GAGCACATCG TGCTCGAAGA AAGCATCGCC 
TACCCGGAGG CACGCCGGGC CCAGGCCGCT GCCGAGGCCG GCCGAGCCTT GCGCCGAGCC 
ACCGCGCTCG CAGAGGCCAG CACCGGTTGA
 
Protein sequence
MSNGSLQALH ARASSRARPE TSEALSPMEV LDADHRQMVV MLAKLGSLVD AGNDLSAQPM 
RALALEVHGF FGEHARRHHA DEEQHIFPDL LNSSDASVRA HAERLQQDHR WLEQDWLELA 
PSISCVADGI GGIDEDMLRE AIGIFTALYQ EHIVLEESIA YPEARRAQAA AEAGRALRRA 
TALAEASTG