Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1735 |
Symbol | |
ID | 6161235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1851921 |
End bp | 1853027 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664495 |
Product | spermidine/putrescine ABC transporter ATPase subunit |
Protein accession | YP_001790767 |
Protein GI | 171058418 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000353928 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGTTG TCCAGCAACA AGAAGACTCG GCCTTTCTGC GGATCGAAGC CGTGGTGAAG GATTTCGGTG AGTTCCGCGC CGTCGATCAG GTCAGCCTGA ACGTCGCGCG CGGCGAGATC TTCGCGCTGC TGGGCTCGTC GGGCTGCGGC AAGAGCACGC TGCTGCGCAT GCTGGCGGGT TTCGAGTCGC CCACCTCGGG GCGCATCGTT CTCAACGGCG CCGACCTGGC CGGGCTGCCG CCGTATCGGC GCCCGGTCAA CATGATGTTC CAGTCGTATG CGCTGTTCCC GCACCTGACG GTGTGGGACA ACATCGCCTT CGGCCTCAAG CGCGACGGGC TGCCGCGCGT CGAGATCGAG CAGCGCGTCG AGGAGATGCT GCGCCTGACC CAGCTCGGCA AGTACGCCAG GCGCAAGCCG CACCAGCTCT CGGGCGGCCA GCAGCAGCGC GTGGCGCTGG CGCGCAGCCT GGCCAAGCGG CCGCAGCTGC TGCTGCTCGA CGAGCCGCTC GGCGCGCTCG ACAAGAAGCT GCGCGAGCAG ACCCAGATCG AGCTGGTCAA CATCATCCAC AGCGTCGGCG TGACCTGCGT GATGGTCACG CACGACCAGG AAGAGGCGAT GACGATGGCC TCGCGTCTGG CCGTCATGAG CGAAGGCCGT TTCCTGCAGG TGGGCGGCCC GGCCGACATC TACGAGACGC CGGCCAGCCG CTTCGTCGCC GACTTCATCG GCAACGTCAA CCTGATGGAC GGCAAGATCA CGCTCGACGA GCCCGACCGG GTCGAGGTCG AGTGCGGCGA CGTGACCCAC CACGTCGGCC ACGGCATCAC CGGCTACCTC GGCATGCCCG TCACGGTGGC GGTGCGGCCC GAGAAGATCC ACCTCACGCG CGAACGTGCG GCGCTGCCGC ACAACCAGGT CAGCGGCACG GTGCACGCGC TGTCGTACTT CGGCAGCTTC ACGATCTACC ACCTGCGGCT GGCCAGCGGC GCGACGCTCA AGGTCAACGT CGAGAACGAG GAGCGCCTGA CCGCCGACAA CCCGGTGGTG GGCGATCAGG TCTGGGCCCA CTGGTCGCCG ACCGCCCAGG TCGTGCTGAC GCAGTGA
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Protein sequence | MSVVQQQEDS AFLRIEAVVK DFGEFRAVDQ VSLNVARGEI FALLGSSGCG KSTLLRMLAG FESPTSGRIV LNGADLAGLP PYRRPVNMMF QSYALFPHLT VWDNIAFGLK RDGLPRVEIE QRVEEMLRLT QLGKYARRKP HQLSGGQQQR VALARSLAKR PQLLLLDEPL GALDKKLREQ TQIELVNIIH SVGVTCVMVT HDQEEAMTMA SRLAVMSEGR FLQVGGPADI YETPASRFVA DFIGNVNLMD GKITLDEPDR VEVECGDVTH HVGHGITGYL GMPVTVAVRP EKIHLTRERA ALPHNQVSGT VHALSYFGSF TIYHLRLASG ATLKVNVENE ERLTADNPVV GDQVWAHWSP TAQVVLTQ
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