| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1735 |
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| Symbol | |
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| ID | 6161235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1851921 |
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| End bp | 1853027 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664495 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_001790767 |
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| Protein GI | 171058418 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000353928 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGTTG TCCAGCAACA AGAAGACTCG GCCTTTCTGC GGATCGAAGC CGTGGTGAAG
GATTTCGGTG AGTTCCGCGC CGTCGATCAG GTCAGCCTGA ACGTCGCGCG CGGCGAGATC
TTCGCGCTGC TGGGCTCGTC GGGCTGCGGC AAGAGCACGC TGCTGCGCAT GCTGGCGGGT
TTCGAGTCGC CCACCTCGGG GCGCATCGTT CTCAACGGCG CCGACCTGGC CGGGCTGCCG
CCGTATCGGC GCCCGGTCAA CATGATGTTC CAGTCGTATG CGCTGTTCCC GCACCTGACG
GTGTGGGACA ACATCGCCTT CGGCCTCAAG CGCGACGGGC TGCCGCGCGT CGAGATCGAG
CAGCGCGTCG AGGAGATGCT GCGCCTGACC CAGCTCGGCA AGTACGCCAG GCGCAAGCCG
CACCAGCTCT CGGGCGGCCA GCAGCAGCGC GTGGCGCTGG CGCGCAGCCT GGCCAAGCGG
CCGCAGCTGC TGCTGCTCGA CGAGCCGCTC GGCGCGCTCG ACAAGAAGCT GCGCGAGCAG
ACCCAGATCG AGCTGGTCAA CATCATCCAC AGCGTCGGCG TGACCTGCGT GATGGTCACG
CACGACCAGG AAGAGGCGAT GACGATGGCC TCGCGTCTGG CCGTCATGAG CGAAGGCCGT
TTCCTGCAGG TGGGCGGCCC GGCCGACATC TACGAGACGC CGGCCAGCCG CTTCGTCGCC
GACTTCATCG GCAACGTCAA CCTGATGGAC GGCAAGATCA CGCTCGACGA GCCCGACCGG
GTCGAGGTCG AGTGCGGCGA CGTGACCCAC CACGTCGGCC ACGGCATCAC CGGCTACCTC
GGCATGCCCG TCACGGTGGC GGTGCGGCCC GAGAAGATCC ACCTCACGCG CGAACGTGCG
GCGCTGCCGC ACAACCAGGT CAGCGGCACG GTGCACGCGC TGTCGTACTT CGGCAGCTTC
ACGATCTACC ACCTGCGGCT GGCCAGCGGC GCGACGCTCA AGGTCAACGT CGAGAACGAG
GAGCGCCTGA CCGCCGACAA CCCGGTGGTG GGCGATCAGG TCTGGGCCCA CTGGTCGCCG
ACCGCCCAGG TCGTGCTGAC GCAGTGA
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| Protein sequence | MSVVQQQEDS AFLRIEAVVK DFGEFRAVDQ VSLNVARGEI FALLGSSGCG KSTLLRMLAG
FESPTSGRIV LNGADLAGLP PYRRPVNMMF QSYALFPHLT VWDNIAFGLK RDGLPRVEIE
QRVEEMLRLT QLGKYARRKP HQLSGGQQQR VALARSLAKR PQLLLLDEPL GALDKKLREQ
TQIELVNIIH SVGVTCVMVT HDQEEAMTMA SRLAVMSEGR FLQVGGPADI YETPASRFVA
DFIGNVNLMD GKITLDEPDR VEVECGDVTH HVGHGITGYL GMPVTVAVRP EKIHLTRERA
ALPHNQVSGT VHALSYFGSF TIYHLRLASG ATLKVNVENE ERLTADNPVV GDQVWAHWSP
TAQVVLTQ
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