Gene Lcho_1731 details

Gene Information

• Locus tag: Lcho_1731
• ID: 6161971
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1847304
• End bp: 1849217
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641664491
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_001790763
• Protein GI: 171058414
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG5002] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.00000986575
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGGCAAGC CCGCGCCGCA GCGTACCGGT GCCTTGCACC CGCCGTTGCC GGTGTGGCTG 
CCGTATTTCC TGTCGGCCTT GCTGGTGACG GTGCTGGTGG TGGTGCTGGC CGGGCTTTCG 
CTGTGGCAGG AAAAGCTGCG CCAGCGCGAG CGCGCGGCGG TGGCGGCCCA GAACGTCGTG 
CGCCTGCTCG AGGCCCATGT CGCCGACGTG TTCCGCCATT GCGACACCTG GCTGCATGTG 
GTGAGCCGGC TGATCGCCGA GCGCGAGCCC GGCGTGTCGC TGAACTCGCC GGTGCTGCAG 
CGCAACCTGG AGATCGAGCA GACCGCGGTC GGCGAGTTGC GCCGCGTTCG TGTCACCGAT 
GCCGGCGGGC AGGTGGTGGT CGGCGACACC TGGGCCGATC CGGCGGCGCG CGACCTGTCG 
TCGCGGGCCG ATTTCCGCCG CGCGATGACG GTCGCCGATG CCGGCCTGAT CGTCACCGGC 
CCCAAGCGTG ACACCGCCAG CGGTGAATGG TCGATGAGCC TGATGCGCGC CGTGCGTGGC 
GCCGACGGAC GTTTCCAGGG CGTGGTGGTG GCGGATCTGC CGGTGCGCCA TTTCGCCGCC 
CGTTTCGCGG CACCCGAGCT CGGGCAGCGC GGTGCGGCGA CCATCCGCAC CTCGGGCCTG 
GCCCTGGTGC TGCGCGAGCC GTGGCCGGGC GACGACAGCC GCCTGATCGG CAGCACCGAG 
GTCTCCCGGC AGCTGCGCGA GGTGCTCGCC AATCCGGCCA GAGAGGGCAG CTACATCGCC 
GCCACCGCGC TCGACGGCAT CGAGCGGGTC AACGCCTACC GCAAGTTGCG CGACTACCCG 
CTGACGGTGA TCGTCGGCCT GGCCACCGAC GACTTCGCGC CGGCCTGGAA CACCATCGCG 
CTGATGATCG GCCTGCTGTC GGCGATGAGC GTGGGCACGG TGATCCTGGC GGCCGTGCTG 
CTGTACCGCG GCTCGCGCCG CCAGATCGAT GCCGCGCAGC AGCGCTTCGA TTCGGTCGTG 
CGCTACTCGC GCGATGCGAT CGTCTGCAAG TCGCGCGCGG GCATCGTCAC CAGCTGGAAC 
GCCGGCGCCG AGGCGATCTT CGGCTACACC GAGGCCGAGA TGCTGGGCCG ACCCGTCACC 
GTGCTGCTGC CGCCCGAGCG CCAGCACGAG GAGGCCGAGA TCCTGGCCTG CGTGGCGCGC 
GGCGAGCGGG TCGAGCCCTT CGAGACCGTG CGGCTGCACA AGAACGGTCA GCGGCTGGCG 
ATCTCGATCT CGGTGGCGCC GCTGGTCGAT GCCGAGCAGC AGATCGTCGG CGCCTCCAGC 
ATCGCGCGCG ACGTCACCCG TCAGCGTGCG ATGGAAGAAG AGATCCGCAG CCTGGCCTTC 
GACGATCCGC TCACCCGTTT GCCCAACCGC CGCCTGCTGC TCGACCGCCT CGGCCACGCC 
CTGGCGGCCG CACGCCGCAG CCACGTCTGC GCGGCGGTGA TCTTCATCGA TCTCGACCAC 
TTCAAGCAGC TCAACGACCT GCACGGCCAC GCGGCCGGCG ACCGCCTGCT GGTCGACGTG 
GCCCGGCGCC TGCGCGCCAC CGTGCGCGAG AGCGACACCG TGGCGCGGCT GGGTGGCGAC 
GAGTTCGTGG TGGTCTGCAC CGACCTGGGC GCCGACGTGG CGCAGGCCCA TGTCGAGGCA 
CAGGCACTGG AGGCCAAGAT CGAGGCCGCG ATCAGTCACG ACATGCCGGT GGGCGAGGCG 
GTTTTCGTCT GCCGTGCCAG CGTCGGCTAC CGGCTCTTCT GCGGCGGCGA CGACACGATC 
GAAACCCTGC TGCGCGACGC CGATGCGGCG ATGTACGCCA CCAAGGCGAC CCACCGCGCC 
AGCGAGTGGG GCGGCGACGA CCTGGCCGGC ACCCCTCAGT CGCTGGCGCG CTGA 

 

Protein sequence

MGKPAPQRTG ALHPPLPVWL PYFLSALLVT VLVVVLAGLS LWQEKLRQRE RAAVAAQNVV 
RLLEAHVADV FRHCDTWLHV VSRLIAEREP GVSLNSPVLQ RNLEIEQTAV GELRRVRVTD 
AGGQVVVGDT WADPAARDLS SRADFRRAMT VADAGLIVTG PKRDTASGEW SMSLMRAVRG 
ADGRFQGVVV ADLPVRHFAA RFAAPELGQR GAATIRTSGL ALVLREPWPG DDSRLIGSTE 
VSRQLREVLA NPAREGSYIA ATALDGIERV NAYRKLRDYP LTVIVGLATD DFAPAWNTIA 
LMIGLLSAMS VGTVILAAVL LYRGSRRQID AAQQRFDSVV RYSRDAIVCK SRAGIVTSWN 
AGAEAIFGYT EAEMLGRPVT VLLPPERQHE EAEILACVAR GERVEPFETV RLHKNGQRLA 
ISISVAPLVD AEQQIVGASS IARDVTRQRA MEEEIRSLAF DDPLTRLPNR RLLLDRLGHA 
LAAARRSHVC AAVIFIDLDH FKQLNDLHGH AAGDRLLVDV ARRLRATVRE SDTVARLGGD 
EFVVVCTDLG ADVAQAHVEA QALEAKIEAA ISHDMPVGEA VFVCRASVGY RLFCGGDDTI 
ETLLRDADAA MYATKATHRA SEWGGDDLAG TPQSLAR