| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1729 |
|---|
| Symbol | |
|---|
| ID | 6161969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1844917 |
|---|
| End bp | 1845945 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641664489 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001790761 |
|---|
| Protein GI | 171058412 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000628282 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCGATT CACGAGCACA TCAACAACCC GGCATCGCCC CCGAGGCCTG GCGCCTGTCG
GTCGCCCCGA TGCTGGACTG GACCGACCGC CACTGCCGCC ACTTCCATCG CCTGCTCACG
CGCCGCACCC GGCTCTACAC CGAGATGGTC ACCACCGGCG CCCTGCTGCA CGGGGATCAG
GCGCGCCACC TCGACTTCGA CGCCATCGAG CACCCGGTGG CGCTGCAGCT CGGTGGCAGC
GATCCGGCCG ATCTGGCCGC CTGTGCCAGG CTGGCGCAGC GCTGGGGTTA TGACGAGGTC
AACCTCAACT GCGGCTGCCC GAGCGAGCGG GTGCAGAAGG GCGCGTTCGG CGCCTGCCTG
ATGGCCGAGC CGGCGCTGGT GGCCGATGGC GTCAAGGCGA TGCGCGACGC GGTGGACGTG
CCGGTGACCG TCAAGCACCG CATCGGCATC GACCGTGGCG AGAGCTACGA CTTCGTGCGC
GACTTCGTCG GCACGCTGGC GGATGCGGGC TGCGAGGTCT TCATCGTGCA TGCGCGCAAT
GCCTGGCTGC AGGGCCTGAG CCCGAAGGAA AACCGCGACA TCCCGCCGCT GCGCTACGAG
CAGGTCTACC AGCTCAAGCG CGACTTCCCG CAGCTGACGA TCGTCATCAA CGGCGGCATC
AGGACCGACG ACGAGATCGC CGCGCACCTG GCCCATGTCG ACGGCGTGAT GGTGGGCCGT
CAGGCCTATC ACGAACCCTG GCAGATGGCG GGCTGGGACC TGCGTTTCTT CGGCGAGGCC
GCGCCGGCGG GCGAGCGCGC GCAGGTCGAA GCCGCCTGGA TGGACTATCT GCAGGCCCAG
CATCTGGGCG GGCGGCCGTG GCCGCAGGCG ATGCGCCATG CGCTGGGCCT CTGGAACGGC
GTGGCCGGTG CGCGCAGCTG GCGGCAGTTC TGGTCCGACC ATCATCACAA GTTGCGCCCG
CCGCACGAAT TGAGCGCGCT TTCGCCGCGC CCCGGGACGG CCGCCGGACG CGAACGGATT
GCCCCTTAA
|
|---|
| Protein sequence | MIDSRAHQQP GIAPEAWRLS VAPMLDWTDR HCRHFHRLLT RRTRLYTEMV TTGALLHGDQ
ARHLDFDAIE HPVALQLGGS DPADLAACAR LAQRWGYDEV NLNCGCPSER VQKGAFGACL
MAEPALVADG VKAMRDAVDV PVTVKHRIGI DRGESYDFVR DFVGTLADAG CEVFIVHARN
AWLQGLSPKE NRDIPPLRYE QVYQLKRDFP QLTIVINGGI RTDDEIAAHL AHVDGVMVGR
QAYHEPWQMA GWDLRFFGEA APAGERAQVE AAWMDYLQAQ HLGGRPWPQA MRHALGLWNG
VAGARSWRQF WSDHHHKLRP PHELSALSPR PGTAAGRERI AP
|
|---|
| |