| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1725 |
|---|
| Symbol | |
|---|
| ID | 6162500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1841115 |
|---|
| End bp | 1842344 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641664485 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790757 |
|---|
| Protein GI | 171058408 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1262] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03440] conserved hypothetical protein TIGR03440 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000000255242 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAG CCTCAGACAT CGGCATCGAC ATCCGCCAAT CAGGCCGCGA CGCCCTGGCC
GAAGCCCTGC AGGCCAGCCG GCGCGACACG CTGCGCACCT TCGAGCGTTA CGCCGCCGGG
CTGGCCACCT TGAGCGTGCC GATGCAGGCC ACGCTGAACC CGCCGCTGTG GGAGCTGGGC
CACATCGGCT GGTTCCAGGA CCACTGGATC GCGCGCAACC CCGAGCGCGC GCACGGCGCC
GCCGCCGATC CCGACGCTCC GCGCGGGCCG TGCCTGCCCG CCAATGGCGA CGCGCTCTAC
AACTCCAGCC GCGTGCCGCA CGACAGCCGC TGGCAGCTGC CGCTGCCCGA CGCGGCGGCC
ACCCGCGCCG ATCTGGCGCG GCAACTCGAT CGCACGCTCG CCCTGCTGGC CGATCCGCGC
GCCACCGACG ACAGCGACGC CGGCCTGTAT TTCTTCCGGC TCGCCCTGCT GCACGAGGAC
ATGCACCACG AGGCCGCGCT CTACATGGCG CAGTCGCTGG GCCTGCCGCT GGGAGACGGC
ACGCCGCAGC CGCCGCGGCT GGGCGAGGCC AACCCGCCGC TCGATTTCGA CGCCGGCGCC
TGGCGGCTCG GCCATGCCGG GCCCGGTTTT GCGTTCGACA ACGAGCTCGG CGCCCACGAG
GTCGCCGTAC CCGCCGGCCG GATCGACGCC CGCGTGCTGC GCTGGGCCGA GTACCTGCCG
TTCGTCGAAG CCGGCGGTTA TGCCAGCGCG CACTGGTGGA GCGACGCCGG CCGCGCCTGG
CTGGCGCAGC AGGACGCCTC GGCGCCGCGT TATCTGCGCC GCCAGGGCAA GGCCTCGGGC
ACCTGGCAAA AATGGCGCGA CGGCCACTGG CTGGCGCTCG ATCTCGCGCA GCCGGCCTGC
CACCTGAGCG CCTTCGAGGC CGAGGCCTGG TGCCGCTGGG CCGGCCGGCG CCTGCCGACC
GAGGCCGAGT GGGAGCGCGC CGCCATCAGC CAACCCGAGG CCTTTCACTG GGGCGCAGTC
TGGGAGTGGA CGGCCAGCGA TTTCGCGCCC TACCCCGGCT TCACGCCGCA CCCCTACGTC
GACTATTCGG CGCCCTGGTT CGGCAGCCGG CGGGTGCTGC GCGGCGGCTC GTTCGGCACC
CAGGCACGCA TGCACCACCC GCGCTACCGC AACTTCTTTC CGCCCGAGCG CAGCGATGTC
TTCGCAGGCT TCAGGACGTG CGCGGCCTGA
|
|---|
| Protein sequence | MNSASDIGID IRQSGRDALA EALQASRRDT LRTFERYAAG LATLSVPMQA TLNPPLWELG
HIGWFQDHWI ARNPERAHGA AADPDAPRGP CLPANGDALY NSSRVPHDSR WQLPLPDAAA
TRADLARQLD RTLALLADPR ATDDSDAGLY FFRLALLHED MHHEAALYMA QSLGLPLGDG
TPQPPRLGEA NPPLDFDAGA WRLGHAGPGF AFDNELGAHE VAVPAGRIDA RVLRWAEYLP
FVEAGGYASA HWWSDAGRAW LAQQDASAPR YLRRQGKASG TWQKWRDGHW LALDLAQPAC
HLSAFEAEAW CRWAGRRLPT EAEWERAAIS QPEAFHWGAV WEWTASDFAP YPGFTPHPYV
DYSAPWFGSR RVLRGGSFGT QARMHHPRYR NFFPPERSDV FAGFRTCAA
|
|---|
| |