| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1724 |
|---|
| Symbol | |
|---|
| ID | 6162499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1840119 |
|---|
| End bp | 1841105 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664484 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790756 |
|---|
| Protein GI | 171058407 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4301] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR03438] probable methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0000000138242 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGAAC CCCGATTTCT GCAGTACCAC CAGGTCGATT CGGCCGCGCT GGTGGCCGAG
GCGGTGGCCG GCCTGCGGGC CGTGTCGGCG CAGCTGTCGC CGAAGTTCTT CTACGACGCG
CTGGGCTCGC GCCTGTTCGA CGCCATCACC GCGCTCGACG AGTACTACCC CACGCGCACC
GAGGCGTCGA TCTTTGCCGC CCATGCCGAC GAGATCGCCG CCGCCGTGCA CGCATCCATC
GGCCGCGACG GGCAACTGGC CGCGATGGTC GACCTGGGTG CCGGCAACTG CGCCAAGGCA
GCCCGCCTGT TCGAGAGCCT GCGGCCGCGG CGCTATGTGG CGGTCGACGT GTCGGTGGAC
TTCCTGCGTG ATGCGCTCGA CGCGCTGCAG CGGCAGTTTC CGGCGCTGGA CCTGGTCGGT
GTCGGCCTGG ACTTTTCGTC GCGGCTGGCG CTGCCCGACG CCGCTGCGGC CGAGCTGATC
GACGGCCCGG CGCTGGTGTT CTACCCCGGC TCCAGCATCG GCAACTTCAG CCCCGACGAG
GCGCTGCGGC TGCTGCGCGA GGCGCGTGAG CTGTCGGCCG GCGGCGCGCT GCTGATCGGC
GTCGATCGGG TCAAGCCGGT CGACGTGCTG GAGGCGGCCT ACGACGACGA GCTCGGCGTC
ACGGCGGCCT TCAACCTGAA CCTGCTCAAG CACATCAACC GGCTGATCGG CAGCGACTTC
AAGCTGCGCG AGTGGCGCCA CGTGGCGCGG TTCGACGCAG CGCAGTCGCG CATCGAGATG
CACCTCGAGG CGCGCCGTGC GCTGACGGTC TGCTGGCCCG GCGGCGAGCG CCGATTCGAG
GCCGGCGAGC GCATCCACAC CGAAAACTCC TACAAGTGGC GGCCGGCGGA TTTCGAGGCG
CTGCTGCATG ACGCCGGCTT CGGCCGGGTG CGCCGCTGGA GCGACGAACG CGGCTGGTTC
GCGGTGATGC TGGCCGACAC GCCCTGA
|
|---|
| Protein sequence | MREPRFLQYH QVDSAALVAE AVAGLRAVSA QLSPKFFYDA LGSRLFDAIT ALDEYYPTRT
EASIFAAHAD EIAAAVHASI GRDGQLAAMV DLGAGNCAKA ARLFESLRPR RYVAVDVSVD
FLRDALDALQ RQFPALDLVG VGLDFSSRLA LPDAAAAELI DGPALVFYPG SSIGNFSPDE
ALRLLREARE LSAGGALLIG VDRVKPVDVL EAAYDDELGV TAAFNLNLLK HINRLIGSDF
KLREWRHVAR FDAAQSRIEM HLEARRALTV CWPGGERRFE AGERIHTENS YKWRPADFEA
LLHDAGFGRV RRWSDERGWF AVMLADTP
|
|---|
| |