| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1722 |
|---|
| Symbol | |
|---|
| ID | 6162497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1838222 |
|---|
| End bp | 1839061 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 641664482 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_001790754 |
|---|
| Protein GI | 171058405 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3638] ABC-type phosphate/phosphonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00000000201925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGAAAGTCG AACTCGACGC CGTCTCGGCG CGCCACCCGG CCGCCCGGCC GGGCGCGGCG
CGGGCGCTGA ACGCGCTGTC GCTGCAGGTG CCGGCCGGCA CGGCGGTGGC CGTGATCGGC
CCGTCGGGCG CCGGCAAGAC CACGCTGCTG CAGGTGCTGG CCTGCGCGAT GCCGCCGGCC
GCGGGCGCCT TGACGCTCGA CGGCGTCGCG CCCTGGCAGC TGCCGCGGCG TGCGCTGCAG
CGGCTGCGCG GGCGGCTGTT CCTGGCGCCG CAGGTGCCGC CGCTGCCGCC GCGCCAGCGC
GTCGTCACCG CCGTGCTGGC CGGGCGCCTG CCGGCGATGA GCCTGTGGGC CAGCCTGCGT
TCGCTGTTCT ACCCGAGCGA CATCCCGGCC GCCCACGCCG CGCTCGACCG TTTCGACCTG
GCCGACAAGC TGTTCGAGCG CGTCGACCGG CTGTCCGGCG GCGAGCGCCA GCGGGTCGGC
CTGGCGCGTT CGCTGCTGGC GCCGGCCTCG TTGTGGCTGA TCGACGAGCC GCTGTCGGCG
CTCGACCCGC TGCGCGCGCA GCAGGCGCTC GACGCGCTGA TCGACGAAGC GCGCACGCGC
GGCGTCACGC TGGTGGCGAC GCTGCACCAG GTCGATGCGG CGCTGGCGCA CTTTCCGCGC
ATCGTCGGCC TGCGTGACGG CGCCGTCGCC TTCGACCTGC CGACGGCCGA GGTCACGCCC
GAGCACCTGG CGCGGCTGTA CGCGCAGCAC GAGGACGAGC TGACCGGTGC GGCGCCTGCG
CCCGAGCCGG TGCCGGCCGC GCCGCCGCGC ACCGCGCCTG CCGTGATGCA CTGCCGATGA
|
|---|
| Protein sequence | MKVELDAVSA RHPAARPGAA RALNALSLQV PAGTAVAVIG PSGAGKTTLL QVLACAMPPA
AGALTLDGVA PWQLPRRALQ RLRGRLFLAP QVPPLPPRQR VVTAVLAGRL PAMSLWASLR
SLFYPSDIPA AHAALDRFDL ADKLFERVDR LSGGERQRVG LARSLLAPAS LWLIDEPLSA
LDPLRAQQAL DALIDEARTR GVTLVATLHQ VDAALAHFPR IVGLRDGAVA FDLPTAEVTP
EHLARLYAQH EDELTGAAPA PEPVPAAPPR TAPAVMHCR
|
|---|
| |