| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1720 |
|---|
| Symbol | |
|---|
| ID | 6162814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1836524 |
|---|
| End bp | 1837360 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641664480 |
|---|
| Product | phosphonate ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001790752 |
|---|
| Protein GI | 171058403 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3639] ABC-type phosphate/phosphonate transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01097] phosphonate ABC transporter, permease protein PhnE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000000362895 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGC CGATGAAACC CCAGGCCGCC AACCCGCCCT ACAAGCTGCC GCCGCCGCTG
TTCGACGCCC GCTGCAAGGC CTGCTGGTTC ACGCTCGGCC TGATCGTGCT GGTGCTGGCG
AGCTTCGTCT CGCTCGACCT GCAGTGGGCG CAGTTCTTCT CGCTCGACGC GGCGCGCAGC
ATGGGCCGTT TCGTCGGCGA GTTCTTCCCG CCCGACCTGA GCGCGCCCTT CCTGCGCAAG
GTGGCGACCG GCACGCTCGA GACGCTGGCG ATGTCGGCGC TGGGCACGAT CCTGGCCGCC
GCAGCCGGCC TGCTGCTGGC GCTGCCGGCC AGCCGCCTGC ACGCCGCCGA TCCGGCCTAC
GCACGCGCCC CGACCCGGCT GCTGCTCAAC GCGCTGCGTT CGATCCCCGA GCTGGTGTGG
GCCGCGCTGC TGCTGATCTC GGCCGGCCTC GGGCCGCTGG CGGGCACGCT GGCGCTGGCG
CTGCACACCA GCGGCGTGCT CGGCCGGCTG TTTGCCGAGG CGCTCGAAAA CGCCCCGCCC
GGCCCCGGCG AAGCGCTGCG CGCGCAAGGC GTGGGCGACG CCCGGGTGCT GCTCTACGCC
ACGCTGCCGC AGGTGCTGCC GCAGCTGCTG AGCTACACGC TGTACCGCTG GGAGAACAAC
ATCCGCGCCG CCGCCGTGCT GGGCGTGGTG GGCGCCGGCG GGCTCGGCCA GCTGCTGGCC
TTCCACATGG GGCTGTTCCA CATGGGCAAG ACCGCCACCA TCCTGGGCGC GATGCTGGCG
CTGGTGGCGC TGGTCGATGT GCTGAGCTAC GCCAGCCGCC GGCTGATGAC CCGCTGA
|
|---|
| Protein sequence | MPLPMKPQAA NPPYKLPPPL FDARCKACWF TLGLIVLVLA SFVSLDLQWA QFFSLDAARS
MGRFVGEFFP PDLSAPFLRK VATGTLETLA MSALGTILAA AAGLLLALPA SRLHAADPAY
ARAPTRLLLN ALRSIPELVW AALLLISAGL GPLAGTLALA LHTSGVLGRL FAEALENAPP
GPGEALRAQG VGDARVLLYA TLPQVLPQLL SYTLYRWENN IRAAAVLGVV GAGGLGQLLA
FHMGLFHMGK TATILGAMLA LVALVDVLSY ASRRLMTR
|
|---|
| |