| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1709 |
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| Symbol | |
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| ID | 6162234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1826386 |
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| End bp | 1828548 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664469 |
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| Product | SNARE associated Golgi protein |
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| Protein accession | YP_001790741 |
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| Protein GI | 171058392 |
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| COG category | [C] Energy production and conversion
[S] Function unknown |
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| COG ID | [COG0398] Uncharacterized conserved protein
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0000000794028 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCGCCG CGCCCAGACG CGCCGTCTGG ATCGGCCTGG CCGCGTTCGC GCTGCTCACC
GTGGTGCTGT ACCGGCAGTT CGATGTCGGC CAGTGGCTCA CGCTCGATGC CCTCAAGGCC
AGCCGCGACG CGCTGATCGC CCGATACGAG GCCCGCCCGA TCGCCACGCT GGCGGCGTAC
TTCGTGATCT ACGTCGTCGC CACCGCGCTG TCGCTGCCCG GCGCGGTGAT CCTGACGCTG
GCCGGCGGCG CGCTGTTCGG GCTGGGCATC GGGCTGGTGG TGGTGTCGTT CGCGTCGAGC
CTGGGCGCGC TGCTGGCCTT CCTGGCCGCG CGCTACCTGC TGCGCGACCG GCTGCAGGCG
CGCTTCGGCG CGCAGCTGGC GCCGATCAAC GAAGGCATCC GGCGCGACGG CACCTTCTAC
CTGCTGACGC TGCGGCTGGT GCCGGTGTTC CCGTTCGTGG TGATCAACCT GCTGGCCGGC
CTGGCGCCGA TCAGCGCGGC ACGCTTCTAC GTCGTCAGCC AGATCGGCAT GCTGGTCGGC
ACCGCCGTGT ACGTGAACGC CGGCACCCAG CTCGCGGGCA TCCAGACGCC GGCCGACGTG
CTGTCGCCCG CGCTGCTCGG CAGCTTCGTG CTGCTGGGCG TGTTTCCGCT GATCGCCAAG
TTCGTCGCCG ACGCGCTGCG GCGCCGCAAG GTCTACGCAA AGTGGCCGCG GCCCAGGTCG
TTCGACCGCA ACCTGGTCGT GATCGGCGCG GGCGCGGGCG GGCTGGTGAC GGCCTACATC
GCCGCGGCGG TCAAGGCGAA GGTGACGCTG GTCGAAGGCC ACAAGATGGG CGGCGACTGC
CTGAACTACG GCTGCGTGCC GAGCAAGGCG CTGATCCGCT CGGCCAAGGC GATGCACCAG
ATCCGCCGGG CCGAGGCGCT GGGCGTGCGC GGCGCGGCCG GCGAAGTCGA TTTCGCGGCC
GTGATGGCAC GCATCCGGCG CGTGGTGCGC GACATCGAGC CGCACGATTC GGTCGAGCGC
TACACCGCGC TGGGTGTCGA CGTGGTGCAG GGCCAGGCGC GCATCACCTC GCCGTGGTCG
GTCGAGATCA GCACGCCGAC CGGTGTGCAG ACGCTGACCA CGCGCAGCAT CGTCATCGCC
ACCGGCGCGC GGCCGTTCGT GCCGACGATC CCCGGTCTGG CCGAGGTGGG TTTTCTGACC
TCGGACACGC TGTGGGGCCT GACCGAACTG CCGCGGCGCC TGCTGGTGCT GGGCGGCGGG
CCGATCGGCT GCGAGCTGGC GCAGAGTTTT GCGCGGCTGG GCTCGGCGGT CACGCAGGTC
GAGATGGCGC CGCAGGTGAT GGGCCGTGAA GACGCCGAGG TGTCGGCGCT GGTGGCGCAG
GCCTTGCGCG CGGACGGCGT CGAACTGTTG ACCGGCCATC AGGCGATCCG CTGCGAGCAG
GACGGCGGCG TCAAGCGGCT GATCGTCAGA CACGGCGATG CCGAACGCGC GATCGAGTTC
GACACCCTGC TGTGCGCGGT CGGCCGCAGC CCGCGGGTCG AGGGCTTCGG GCTCGAAGAA
CTGGGCATCG CGCTGACCGC ACGCAAGACC GTCGAGACCG ATGCGTATCT GCAGACGCTC
TACCCCAACA TCTACGCAGT GGGCGACGTC GCCGGCCCCT ACCAGTTCAC GCACACCGCC
TCGCACCAGG CCTGGTACGC GGCGGTCAAC GCGCTGTTCG GCCGCTTCAA GCGTTTCAAG
GCCGACTACT CGGTGATCCC GTGGGCGACC TTCACCGATC CCGAGGTGGC GCGGGTCGGG
CTGTCCGAGG CCGAGGCGCG CGAGCGTGGC ATCGCGGTCG AAGTCACGCG CTACGGCATC
GACGACCTCG ATCGCGCGAT TGCCGACGGC AGCGCGCACG GTTTCGTCAA GGTGCTGACG
GTGCCGGGCA AGGACCGTAT CCTGGGCGCG ACCATCGTCG GTGAACACGC CGCCGACCTG
CTGGCGGAGT TTGTGCTGGC GATGAAACAC GGCCTGGGCC TGAACAAGAT CCTCGGCACC
ATCCACACCT ACCCGACCCT GGCCGAGGCC AACAAGTACG CCGCCGGCAA CTGGAAGCGC
GCGCATGCGC CCCAGCGGCT GCTGGCCTGG GTCGAACGAT TCCACGCCTG GGAGCGCACA
TGA
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| Protein sequence | MAAAPRRAVW IGLAAFALLT VVLYRQFDVG QWLTLDALKA SRDALIARYE ARPIATLAAY
FVIYVVATAL SLPGAVILTL AGGALFGLGI GLVVVSFASS LGALLAFLAA RYLLRDRLQA
RFGAQLAPIN EGIRRDGTFY LLTLRLVPVF PFVVINLLAG LAPISAARFY VVSQIGMLVG
TAVYVNAGTQ LAGIQTPADV LSPALLGSFV LLGVFPLIAK FVADALRRRK VYAKWPRPRS
FDRNLVVIGA GAGGLVTAYI AAAVKAKVTL VEGHKMGGDC LNYGCVPSKA LIRSAKAMHQ
IRRAEALGVR GAAGEVDFAA VMARIRRVVR DIEPHDSVER YTALGVDVVQ GQARITSPWS
VEISTPTGVQ TLTTRSIVIA TGARPFVPTI PGLAEVGFLT SDTLWGLTEL PRRLLVLGGG
PIGCELAQSF ARLGSAVTQV EMAPQVMGRE DAEVSALVAQ ALRADGVELL TGHQAIRCEQ
DGGVKRLIVR HGDAERAIEF DTLLCAVGRS PRVEGFGLEE LGIALTARKT VETDAYLQTL
YPNIYAVGDV AGPYQFTHTA SHQAWYAAVN ALFGRFKRFK ADYSVIPWAT FTDPEVARVG
LSEAEARERG IAVEVTRYGI DDLDRAIADG SAHGFVKVLT VPGKDRILGA TIVGEHAADL
LAEFVLAMKH GLGLNKILGT IHTYPTLAEA NKYAAGNWKR AHAPQRLLAW VERFHAWERT
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