| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1700 |
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| Symbol | |
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| ID | 6162767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1814675 |
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| End bp | 1816153 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641664460 |
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| Product | NusA antitermination factor |
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| Protein accession | YP_001790732 |
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| Protein GI | 171058383 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.00892855 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCGCG AATTGTTGAT GCTGGTGGAC GCGATCTCGC GTGAGAAGAA CGTCGACCGC
GAGGTGGTGT TCGGCGCTGT CGAGGCTGCG CTGGCCTCTG CCACCAAGAA GCTTTATGAA
GGCGAGGTCG ACATCCGTGT CGCCGTCGAT CGTGACACCG GGGTCTACGA GACCTTCCGC
CGCTGGCACG TCGTTCCCGA CGAGGCCGGT CTGCAGCTGC CCGAGGCCGA GATCCTGCAT
TTCGAGGCCA AGGAACAGAT CGACGACATC GAGGTGGACG ACTACCTCGA GGAATCGGTC
GAGTCGGTGC CGATCGGCCG CATCGGTGCA CAGGCTGCCA AGCAGGTGAT CCTGCAGAAG
ATCCGCGACG CCGAGCGCGA GCAGCTGCTC AACGACTTCA TGTCGCGTGG CGAGAAGATC
TTCGTCGGCA CCGTCAAGCG CCTCGACAAG GGCGATCTGG TGGTCGAGAG CGGGCGCGTC
GAGGGCCGCC TGCGGCGCAG CGAGCTGATC CCGAAGGAAA ACCTGCGCAC CGGTGATCGC
GTGCGCGCCA TCATCGTCGA GGTCGATCCG ACCCTGCGTG GTCCGCAGAT CGTGCTGTCG
CGCTCGGCGC CCGAATTCAT GATCGAGCTG TTCCGCCTGG AAGTGCCCGA GATCGAACAA
GGCCTGCTCG AGATCAAGAG CTGCGCGCGT GACTCCGGTT CGCGCGCCAA GATCGCCGTG
GTCTCGCATG ACCGGCGCGT CGATCCGATC GGCACCTGCG TCGGCGTGCG CGGCTCGCGT
GTCAATGCCG TCACCAACGA ACTGGCGGGC GAGCGGGTCG ACATCGTGCT GTGGTCGGAA
GATCCGGCGC AGTTCGTGAT CGGCGCGCTG GCTCCGGCGA ACGTGCAGTC GATCGTCGTC
GACGAGGAAA AGCATGCGAT GGACGTGGTG GTCGACGAGG AAAACCTCGC GATCGCGATC
GGTCGCGGTG GCCAGAACGT GCGGCTGGCG TCCGAGCTGA CCGGCTGGCG CATCAACATC
ATGACGGCCG AAGAATCGCA GGCCAAGCAG GCCACCGAGA GCGACTCGAT CCGCAAGCTC
TTCGTCGACA AGCTCGACGT CGACGAGGAT GTGGCCGACA TCCTGATTGC CGAGGGCTTC
ACCAGCCTCG AAGAAGTGGC CTACGTGCCG ATGCAGGAAA TGCTCGAGAT CGAGTCGTTC
GACGAAGATA CCGTGCACGA GCTGCGCACC CGCGCCAAGG ATGCCCTGCT GACGATGGAA
ATCGTCAACG AGGAGAAGGT CGACGAGGTG TCGCAGGATC TGCGTGATCT CGAGGGCCTG
AATGCCGAGC TGATCGGCAA GCTCTCCGAT GGTGGCATCC ACACACGTGA CGATCTGGCC
GATCTGGCTG TCGACGAGTT GACCGAAATG ACCGGCATCG ACGACAACGC CGCCAAGGCC
CTGATCCTCA AGGCCCGTGA ACATTGGTTC ACGGCCTGA
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| Protein sequence | MNRELLMLVD AISREKNVDR EVVFGAVEAA LASATKKLYE GEVDIRVAVD RDTGVYETFR
RWHVVPDEAG LQLPEAEILH FEAKEQIDDI EVDDYLEESV ESVPIGRIGA QAAKQVILQK
IRDAEREQLL NDFMSRGEKI FVGTVKRLDK GDLVVESGRV EGRLRRSELI PKENLRTGDR
VRAIIVEVDP TLRGPQIVLS RSAPEFMIEL FRLEVPEIEQ GLLEIKSCAR DSGSRAKIAV
VSHDRRVDPI GTCVGVRGSR VNAVTNELAG ERVDIVLWSE DPAQFVIGAL APANVQSIVV
DEEKHAMDVV VDEENLAIAI GRGGQNVRLA SELTGWRINI MTAEESQAKQ ATESDSIRKL
FVDKLDVDED VADILIAEGF TSLEEVAYVP MQEMLEIESF DEDTVHELRT RAKDALLTME
IVNEEKVDEV SQDLRDLEGL NAELIGKLSD GGIHTRDDLA DLAVDELTEM TGIDDNAAKA
LILKAREHWF TA
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