Gene Lcho_1695 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1695 
Symbol 
ID6163203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1809315 
End bp1810577 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content66% 
IMG OID641664455 
Productextracellular solute-binding protein 
Protein accessionYP_001790727 
Protein GI171058378 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.157617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGA TGGAAATGAC CTTGGCCCGC ACCCTGCTGG CCACCGCCGC TGTGATCACC 
CTCAACGGCG TGGCGCAAGC CGGCGAAGTC GAGGTGCTGC ACTACTGGAC GTCGGGCGGC
GAGGCCAAGT CGGCCGCTGC GCTCAAGGCC CAGCTCGAGA AGCAGGGTCA CAGCTGGAAG
GACTTCGCGG TCGCCGGCGG CGGTGGCGAA TCGGCCATGA CGGTGCTGAA GTCGCGCGTG
GTCTCGGGCA ACGCCCCGGC CGCGGCCCAG ATCAAGGGCC CGTCGATCCA GGAATGGGCG
CGTGAAGGCG TGCTGACCAA CCTCGACGAA ACCGCCAAGA CCGAGAAGTG GGACACCCTG
CTGCCGCCGG TGGTCGCCGA CGTCATGAAG TACAAGGGCA AGTACGTCGC CGTGCCGGTC
AACGTGCACC GCGTCAACTG GCTGTGGGCC AACCCCGAAG CCCTGAAGAA GGCCGGCGCC
AAGCTGCCGA CCAACTGGGA CGAGTTCTTC GTCGCCGCCG ACAAGCTGAA GGCCGCCGGC
ATCATCCCCG TGGCCCACGG CGGCCAGTCG TGGCAGGACT TCACCACCTT CGAGAGCGTG
GCGCTGGGCG TCGGTGGCGC CGACTTCTAC AAGAAGGCCC TGGTGCAGCT CGATCAGGCC
AGCCTGACCA GCGCGACGAT GGAAAAGGTC ATGACCACCT TCAAGAAGGT CAAGACCTAC
ACCGACAAGA ACGCCCCGGG CCGTGACTGG AACCTGGCGA CCGCGATGGT CATCAAGGGC
GAAGCCGGCA TGCAGCTGAT GGGCGACTGG GCCAAGGGCG AGTTCGTCGC CGCCGGCAAG
GTGCCGGGCA AGGACTTCCT GTGCGCCGCC GCCCCCGGCA CCGCCAAGTC GTTCACCTTC
AACGTCGACT CGTTCGCGAT GTTCCAGGTC AAGGGCGACG ACAAGGTCAA GGCCCAGAAG
GACCTGGCTG CCGCCATCCT GTCGCCCGAG TTCCAGGAGG TGTTCAACCT CAACAAGGGC
TCGATCCCGG TGCGCCTGAA CATGCCGATG ACCAAGTTCG ACGACTGCGC CAAGCTGTCG
AGCAACGACT TCGTCGCCAC CAACAAGGGC GGCTCGCTGG TGCCGTCGAT CGCCCACGGC
ATGGCCGTCT CGTCGGCCGC GCAAGGCGCG ATCCAGGACG TCGTCAGCCA GTTCTGGAAC
GACGACAAGA TGAGCGCCAA GGACGCGGTC ACCAAGATCG CCACCGCCGC CAAGACCAAG
TAA
 
Protein sequence
MNKMEMTLAR TLLATAAVIT LNGVAQAGEV EVLHYWTSGG EAKSAAALKA QLEKQGHSWK 
DFAVAGGGGE SAMTVLKSRV VSGNAPAAAQ IKGPSIQEWA REGVLTNLDE TAKTEKWDTL
LPPVVADVMK YKGKYVAVPV NVHRVNWLWA NPEALKKAGA KLPTNWDEFF VAADKLKAAG
IIPVAHGGQS WQDFTTFESV ALGVGGADFY KKALVQLDQA SLTSATMEKV MTTFKKVKTY
TDKNAPGRDW NLATAMVIKG EAGMQLMGDW AKGEFVAAGK VPGKDFLCAA APGTAKSFTF
NVDSFAMFQV KGDDKVKAQK DLAAAILSPE FQEVFNLNKG SIPVRLNMPM TKFDDCAKLS
SNDFVATNKG GSLVPSIAHG MAVSSAAQGA IQDVVSQFWN DDKMSAKDAV TKIATAAKTK