| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1682 |
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| Symbol | |
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| ID | 6163949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1794428 |
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| End bp | 1795714 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664437 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001790714 |
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| Protein GI | 171058365 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0133] Tryptophan synthase beta chain |
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| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGATT ACCAGCAACC CGATGCCCGC GGGCATTTCG GGATCTACGG CGGCAGCTTT
GTCGCCGAAA CCCTGAGCCA CGCGCTCGAC GAACTGAATG CGGCCTACGA GCGTTACCGC
CACGACCCCG AGTTCATCGC CGAATTCCGC AACGAACTGG CGCATTTCGT CGGCCGCCCG
AGCCCGGTCT ATCACGCCGC ACGCATGAGC CGTGAAGTGG GCGGCGCGCA GATCTACCTC
AAGCGCGAGG ATCTCAACCA CACCGGCGCG CACAAGATCA ACAACACCAT CGGCCAGGCG
CTGCTCGCCC GGCGCATGGG CAAGCCGCGC GTGATCGCCG AGACCGGTGC CGGCCAGCAT
GGCGTGGCCA CCGCCACCAT CTGCGCGCGC TACGGCATGG AATGCGTGGT CTACATGGGC
AGCGAGGACG TCAAGCGCCA GAGCCCCAAC GTCTACCGCA TGAACCTGCT GGGCGCGCGC
GTGGTGCCGG TCGAGTCGGG CAGCAAGACG CTCAAGGATG CGCTCAACGA GGCGATGCGC
GACTGGGTCA CCAACGTCGA GAACACCTTC TACATCATCG GCACGGTGGC GGGGCCGCAC
CCGTATCCGG CGATGGTGCG CGACTTCCAG CGCGTGATCG GCGACGAATG CCTGGTGCAG
ATGCCCGCCC TCGCGGGCCG TCAACCCGAT GCGGTGGTGG CCTGTGTCGG TGGCGGCAGC
AACGCGATGG GCATCTTCTA TCCCTACATC CCGCATGAAG GCGTGCGCCT GATCGGTGTC
GAGGCGGCGG GCGAGGGCAT GGAAAGCGGC AAGCATTCGG CCTCCTTGCA ACGCGGCTCC
CCCGGCGTGC TGCACGGCAA CCGCACCTAT GTGCTGCAGG ACGCCAACGG CCAGATCACC
GAGACGCACT CGGTGTCGGC CGGTCTCGAC TACCCCGGCG TCGGCCCCGA GCACGCCTAC
CTGAAGGACA TCGGCCGTGC CGAATACGTC GGCATCACCG ATGCCGAGGC GCTGCAGGCC
TTCCATTACC TGTGCCGCGC CGAGGGCATC ATCCCGGCAC TCGAATCCAG CCACGCGGTT
GCCTACGCGA TGAAACTGGC CAAGACCATG CGCCCGGACC AGCACGTCCT CGTCAATCTG
TCGGGCCGTG GCGACAAGGA CATCGGCACG GTGGCCGACC TGTCGGGCGC CGATTTCTAC
TGCCGGCCGT CGTGCCGCGG CCAGAGCGTG AAGGGCGGCG ATCCGTCCGT GGTCGAGATC
CAGCGCAAGG CCGGGGGTGT GCAATGA
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| Protein sequence | MFDYQQPDAR GHFGIYGGSF VAETLSHALD ELNAAYERYR HDPEFIAEFR NELAHFVGRP
SPVYHAARMS REVGGAQIYL KREDLNHTGA HKINNTIGQA LLARRMGKPR VIAETGAGQH
GVATATICAR YGMECVVYMG SEDVKRQSPN VYRMNLLGAR VVPVESGSKT LKDALNEAMR
DWVTNVENTF YIIGTVAGPH PYPAMVRDFQ RVIGDECLVQ MPALAGRQPD AVVACVGGGS
NAMGIFYPYI PHEGVRLIGV EAAGEGMESG KHSASLQRGS PGVLHGNRTY VLQDANGQIT
ETHSVSAGLD YPGVGPEHAY LKDIGRAEYV GITDAEALQA FHYLCRAEGI IPALESSHAV
AYAMKLAKTM RPDQHVLVNL SGRGDKDIGT VADLSGADFY CRPSCRGQSV KGGDPSVVEI
QRKAGGVQ
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