| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1679 |
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| Symbol | |
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| ID | 6163946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1790265 |
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| End bp | 1792916 |
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| Gene Length | 2652 bp |
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| Protein Length | 883 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664434 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_001790711 |
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| Protein GI | 171058362 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGACG CCTTGAAAAC CGATATGACG CGTACGGGGC GTTTGGCTCT GAAGCAAGTG
GCAGCTGCGG TTGCCGTGAC GGCTGCGATT TGCGCCGCGC CCTCTGCCTG GGCCCTGAGC
CTGGGCCGAC TGACGGTGCA GTCTGCGCTG GGAGAGGGTC TGCGTGCAGA GATCGATGTC
ACCAGCCTGA CGCCCGACGA GGCATCGAAC CTGCGTGTTC GTGTCGCGCC GCCTGATTCG
TATCGAATCG CGGGTGTCGA CTACAACCCC GTCCTGCCGG CCACCAGCGT CACGCTGCAG
CGTCGCGCCG ACGGCACGCC GTTCCTGCGG ATCTCCAGCG ACCAGTCGGT GCAGGAACCG
TTCGTCGACG TGATCCTCGA GATTTCGTGG TCCAGCGGTC GGCTGTTGCG CGAGTACACG
CTCCTGTTCG ATCCGCCGGC AACCGCACGC GCGCCGTCTG CGCCCGCGCC GGCCATCGCC
GCTGCGCCGG CTCCGGCACC GACCCGAGTC GAGCCGCCGG TTCAGGTGCC GGCTCCGGTT
GCTGCGGCAC CGACACCCGC GCCCACCGCA CCGGCGCCTG CGCTGTCGCC GGCGCCTGTC
GCCCCGGCCC GGGGCGAGCT CGCGTTGCGC AAGCCGGCTG CCGAGCCCGA TGCATCGGCG
TCGTCCCCGC CGACCGAATA CCGCGTCAAG CGTGGCGACA CGCTGACGTC CATCTCGTCG
AAGCTGCAGT CCGGTGGCGC GTCGCTCGAT CAGGCGCTGG TGGGCCTGTT CCGTGGCAAT
CCGCAGGCCT TCACGGGTGA CAACATGAAC CGCCTGAAGG CGGGTGTCGT GTTGAACGTG
CCGTCGTCGG AGCAGATGAC CGCGATCGAT GCCCAGGAGG CGCGCCAGAT CATCCAGGCC
CAGAGTGCCG ATTTCAATGC CTATCGGCAG CGTCTCGCCT CATCGGTTCC CGAGCCCAAG
GACGACACCG CACCCGCCCG CCAGGCGACC GGCACGGTCC GGGCCGAGGT GCAGGACAAC
AAGCAGTCCC AGAGCCAGAC CCAGGATCGC CTGCGTCTCG ACAAGGGCAA GCCGGCCACC
GGCGCGGTGG TTGCAAGCGC CGAAGATGCG ATCGCCAAGG AGCGCGCCGC CAAGGAAGCC
GCCGCTCGTG CCACCGAGAT CCAGCGCAAC GTCGAAGAGC TGAAGAAGCT CCAGGCCGCG
TCGGAAGCAC AGATGGCTCG CAAGCCTGCT GCTGCGGTCG CCGCCTCGTC ACCTTTGCCC
GCGTTGAGCG TCGGTGCCGC GCCTGAGCCC GCGCCGGTGG CGGCGTCGGC CGCTTCGGCG
CCGCCTGCCG TTGTCGTCGC TGCTGCGGAG CCCGCGGCAT CACAGGCTTC TGCGCCTGAA
GCGGCAGCCG CTGCAAGCGA TGCGGCCAGC CCGGCCGCGA TGGCGGTAGC GCCTGCTGCC
TCGGTCATGC CGTCCGCACC GGCGCCCGAG CAGGCTGCCG ACGACCAGCC GTCGCTGATC
GACTCGTTGT CCGAAAACCC GTGGGTTCTG CCGGGGGCCG GTCTGGTCCT CGCGCTGCTG
GCGGGTCTGG GCTATTACCG TCTGCGCGGC AAGGGCAAGG AAGACGCCGG TGTGACGTCC
TTCCTTGAAA GCCGTCTGCA GCCGGATTCG TTCTTCGGTG CCAGCGGTGG TCAGCGCATC
GACACCCGTG ATGCATCGGG CGCGCCGTCG TCGATGAGCT ATTCGCTCAG CCAGATCGAT
GCGATCGGCG ACGTCGATCC GGTCGCCGAG GCGGATGTCT ATCTCGCCTA TGGCCGCGAT
CTGCAAGCCG AGGAAATCCT CAAGGAGGCG ATGCGCGCCA ATCCCGAGCG CCTGGCCATC
CGCACCAAGT TGCTCGAGGT CTACGCCAAG CGCCGCGACA CCAAGGGCTA CGAACTGCTC
GCCGGCGAGC TCTACGGACT GACCGGTGGC CAAGGTGAAG ACTGGGTTCG TGCGCAAGAG
CTGGGCCGTT CGATCGACCC TGAGAATCCG CTCTACGAAC CCGGTGGCCA GCCCGGCTCC
GGAAGCTCGG CCGACGTCGG CAGCGAGATG CTCGGCGCGA GCACGATGCC TCAGTCGATC
GTGCCGTCTC CGTCGCGTTT CGAGCACAGC GTGCCCGATC TCGATCTGAC CGGTGACATT
CCCTCGGGCT CGTCTGCGGA TGTCGACCTC GACATCTCGA TGCCTGCCCG GATGGACGAA
GCAGCGCCTT CGGTGCCCAG TGCCTTCAGC AGCGCACCGG CCGGTTTCGA TGCTGCGCCG
TCGGTGCCGG GCAGCAATCT CGATTCCGGC ACGCACAGCC TGGACTTCGA CCTGCACGAT
CTGCCTCAGT TCGATGCGCC GGCTGCAGCC CCGAGTTCGC GTCCGTCCTC GATCGATCTG
GCCGACATCT CGCTCGACCT GGATGCCGCG CCCAGCGTGC CTGCCAATCT GGCATCAACC
GACACCATGT CGGCCTTCGA TGTGGGCGAG GACGACGGTT CGGATCCGCT GGCACGCAAG
CTCGAGCTGG CTGAAGAGTT CAACCAGATC GGTGACTACG AAGGTGCACG GGATCTGCTG
CAGGAGGTCA TCGAGAACGC CGACGGCGCA CTCAAGGCCA AGGCGCAGGC CATGCTCGAC
GGTCTCGCTT GA
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| Protein sequence | MGDALKTDMT RTGRLALKQV AAAVAVTAAI CAAPSAWALS LGRLTVQSAL GEGLRAEIDV
TSLTPDEASN LRVRVAPPDS YRIAGVDYNP VLPATSVTLQ RRADGTPFLR ISSDQSVQEP
FVDVILEISW SSGRLLREYT LLFDPPATAR APSAPAPAIA AAPAPAPTRV EPPVQVPAPV
AAAPTPAPTA PAPALSPAPV APARGELALR KPAAEPDASA SSPPTEYRVK RGDTLTSISS
KLQSGGASLD QALVGLFRGN PQAFTGDNMN RLKAGVVLNV PSSEQMTAID AQEARQIIQA
QSADFNAYRQ RLASSVPEPK DDTAPARQAT GTVRAEVQDN KQSQSQTQDR LRLDKGKPAT
GAVVASAEDA IAKERAAKEA AARATEIQRN VEELKKLQAA SEAQMARKPA AAVAASSPLP
ALSVGAAPEP APVAASAASA PPAVVVAAAE PAASQASAPE AAAAASDAAS PAAMAVAPAA
SVMPSAPAPE QAADDQPSLI DSLSENPWVL PGAGLVLALL AGLGYYRLRG KGKEDAGVTS
FLESRLQPDS FFGASGGQRI DTRDASGAPS SMSYSLSQID AIGDVDPVAE ADVYLAYGRD
LQAEEILKEA MRANPERLAI RTKLLEVYAK RRDTKGYELL AGELYGLTGG QGEDWVRAQE
LGRSIDPENP LYEPGGQPGS GSSADVGSEM LGASTMPQSI VPSPSRFEHS VPDLDLTGDI
PSGSSADVDL DISMPARMDE AAPSVPSAFS SAPAGFDAAP SVPGSNLDSG THSLDFDLHD
LPQFDAPAAA PSSRPSSIDL ADISLDLDAA PSVPANLAST DTMSAFDVGE DDGSDPLARK
LELAEEFNQI GDYEGARDLL QEVIENADGA LKAKAQAMLD GLA
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