Gene Lcho_1678 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1678 
Symbol 
ID6163945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1788876 
End bp1790003 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content67% 
IMG OID641664433 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_001790710 
Protein GI171058361 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01745] aspartate-semialdehyde dehydrogenase, gamma-proteobacterial 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTCG TAGGTTTGGT CGGCTGGCGC GGCATGGTCG GCTCGGTCCT GATGGATCGC 
ATGCAGGCTG AAGATGACTT CGCGCACTTC GAGCCTCTGT TCTTCTCGAC CTCGAACTCG 
GGCGGCAAGG CTCCGGCGCA GGCGAAGAAC GAGACCACGC TGCAGGACGC GTACGACATC 
GACGCGCTCA AGCGCTGCGA CATCATCGTC ACCGCTCAGG GTGGCGACTA CACCTCGGCG 
GTGTTCGGCA AGCTGCGTGC GGCGGGCTGG AACGGCCACT GGATCGATGC GGCGTCGACG 
CTGCGCATGG AGTCCGACGC GGTCATCATC CTCGACCCGG TCAACTCGCC GGTGATCAAG 
GATGCGCTGG CCAAGGGCGG GCGCAACTGG GTCGGTGGCA ACTGCACCGT CAGCTGCATG 
CTGATGGGCG TGGGCGCGCT CTACAAGGCC GGCCTGGTCG AGTGGATGAG CACCCAGACC 
TACCAGGCGG CCAGCGGCGG CGGTGCCCAG CACATGCGCG AACTGCTGAC GCAGTACGGC 
ACGCTCAACG CCTCGGTGCG CGCACTGCTC GACGACCCGA AGAGCGCCAT CCTCGAGATC 
GACCGCCAGG TCATCGCCAC CCAGCGCGGC CTGACGGCCG AGCAGACCGC CAACTTCGGC 
GTGCCGCTGG GCGGTTCGCT GATCCCCTGG ATCGACAAGG ACCTGGGCAA CGGCCAATCC 
AAGGAAGAGT GGAAGGGCAT GGCCGAGACC AACAAGATCC TCGGCCTGGG CGAGGGCTTC 
GGCTCGGCGG CCATCCCGGT CGACGGTTTC TGCGTGCGCG TCGGTGCGAT GCGCTGCCAC 
AGCCAGGCGC TGACCTTCAA GCTCAAGAAG GACGTGCCGG TGGCAGACAT CGAGGCCATG 
ATCGCCGCCG ACAACGAGTG GGTGAAGGTG GTTCCCAATA CCCGCGAAGC GACGATCAAG 
GACCTGACGC CGGTGGCCGT CACCGGCACG ATGACGATTC CGGTCGGTCG CATCCGCAAG 
CTGGCGATGG GCCCTGAATA CGTCGGCGCC TTCACCATCG GCGATCAGCT GCTGTGGGGC 
GCTGCGGAGC CGCTGCGGCG CATGTTGCGC ATCCTGCTGG CCGCCTGA
 
Protein sequence
MALVGLVGWR GMVGSVLMDR MQAEDDFAHF EPLFFSTSNS GGKAPAQAKN ETTLQDAYDI 
DALKRCDIIV TAQGGDYTSA VFGKLRAAGW NGHWIDAAST LRMESDAVII LDPVNSPVIK 
DALAKGGRNW VGGNCTVSCM LMGVGALYKA GLVEWMSTQT YQAASGGGAQ HMRELLTQYG 
TLNASVRALL DDPKSAILEI DRQVIATQRG LTAEQTANFG VPLGGSLIPW IDKDLGNGQS 
KEEWKGMAET NKILGLGEGF GSAAIPVDGF CVRVGAMRCH SQALTFKLKK DVPVADIEAM 
IAADNEWVKV VPNTREATIK DLTPVAVTGT MTIPVGRIRK LAMGPEYVGA FTIGDQLLWG 
AAEPLRRMLR ILLAA