Gene Lcho_1671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1671 
Symbol 
ID6163736 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1780816 
End bp1781466 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content66% 
IMG OID641664425 
ProductHhH-GPD family protein 
Protein accessionYP_001790703 
Protein GI171058354 
COG category[L] Replication, recombination and repair 
COG ID[COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCGG CGCCCTCGCT GGTCGCGCCC GGCTATTGGG ACGACGCGTG CCGGCACCTC 
GTCAAGCGCG ATCGGGTCAT GAAGAACCTG ATTCCGCGTT TTGGCGAGGC GCGACTGCAG 
AGTCGCGGCG ACGCGTTCAC GACCCTGGCG CGGTCGATCG TCGGCCAGCA GATCTCGGTC 
AAGTCGGCGC AGGCGGTGTG GGGGCGGTTC ATCGCCCTCT CGGTCGATCC GACTGCGCCG 
CTGACGCCCG ATTGGCTGCA GGGTCTGGCG ATCGACTCGA TGCGTGCGGC GGGCCTGTCG 
GCACGCAAGG TCGACTACCT GCGTGACCTG GCGAACCACT TCCTCGAGCG CAGTGTCCAC 
GAGACCGATT GGCTGTCGAT GGACGACGAG GCCATCATCG AAGAACTGGT CGCCATCCGG 
GGCATCGGCC GCTGGACGGC GGAGATGTTC CTGATCTTCC ACCTGATGCG CCCCAACGTG 
CTGCCGCTCG ACGACGTCGG GCTGATCAAG GGCATCAGCC TGAACTATTT CAGTGGCGAA 
CCGGTGTCGC GTGCCGAGGC GCGCGAGGTC GGCGACGCCT GGGCGCCATT CAGGTCCGTC 
GCGACCTGGT ACATCTGGCG CAGCCTCGAT CCGTTGCCCG TCGAGTACTG A
 
Protein sequence
MDSAPSLVAP GYWDDACRHL VKRDRVMKNL IPRFGEARLQ SRGDAFTTLA RSIVGQQISV 
KSAQAVWGRF IALSVDPTAP LTPDWLQGLA IDSMRAAGLS ARKVDYLRDL ANHFLERSVH 
ETDWLSMDDE AIIEELVAIR GIGRWTAEMF LIFHLMRPNV LPLDDVGLIK GISLNYFSGE 
PVSRAEAREV GDAWAPFRSV ATWYIWRSLD PLPVEY