Gene Lcho_1668 details

Gene Information

• Locus tag: Lcho_1668
• ID: 6163733
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1776706
• End bp: 1777275
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641664422
• Product: peptidyl-prolyl cis-trans isomerase cyclophilin type
• Protein accession: YP_001790700
• Protein GI: 171058351
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 38
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATGG GCACGTTCGC CCGCGGCTGC GCCGCAATCA CACTCGGCCT GGCCTTGAGT 
TCGGCCGCAC TGGCCCAGAA GGTCCGCCTG GCCACCTCGA TGGGCGACAT CGTGGTCGAG 
CTCGACGCCG CCAAGGCGCC GAAGTCGGCC GACAACTTCA CCCAGTACGT CAAGGCCGGC 
CACTACGACG GCACGATCTT CCACCGCGTG ATCGGCAACT TCATGATCCA GGGCGGCGGC 
ATGGACGCCA CCATGAAGGA AAAGCCCACC CGCGCGCCGA TCCCGCTCGA GAGCCGCAAC 
GGCCTGTCCA ACAAGGTCGG CACGCTGGCG ATGGCGCGCA CCAACGTGCC CGATTCGGCC 
ACCTCGCAGT TCTTCATCAA CGTCAAGGAC AACCACTTCC TCGACCAGCC CAACTCGCAG 
GACGGCAACG GCTATGCCGT CTTCGGCAAG GTGGTCGAAG GCATGGACGT GGTCGAGAAG 
ATCCGCGGCG TACCCACCGG CAACCGCGGC ATGCATCAGA ACGTGCCGAA CGAACCGGTC 
CTGATCAAGA AAGCAACCCT GGAGAAATGA 

 

Protein sequence

MKMGTFARGC AAITLGLALS SAALAQKVRL ATSMGDIVVE LDAAKAPKSA DNFTQYVKAG 
HYDGTIFHRV IGNFMIQGGG MDATMKEKPT RAPIPLESRN GLSNKVGTLA MARTNVPDSA 
TSQFFINVKD NHFLDQPNSQ DGNGYAVFGK VVEGMDVVEK IRGVPTGNRG MHQNVPNEPV 
LIKKATLEK