| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1662 |
|---|
| Symbol | |
|---|
| ID | 6162135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1771420 |
|---|
| End bp | 1771659 |
|---|
| Gene Length | 240 bp |
|---|
| Protein Length | 79 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641664416 |
|---|
| Product | cold-shock DNA-binding domain-containing protein |
|---|
| Protein accession | YP_001790694 |
|---|
| Protein GI | 171058345 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.801094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCG GGATCGTCAA ATGGTTCAAT GACGTCAAGG GGTTTGGTTT CATTGAGCCT
GAGGAGGGTG GAGAAGACGT GTTTGCGCAC TTTTCAGCCA TCCAGATGGA GGGTTTCCGC
ACGCTCAAGC AGGGATCGTC GGTCGATTTC GACCTGGTCG ACGGCCCCAA GGGCAAGCTG
GCGCAGAACA TCCGCGCCAA CCAGATCGCC GCCGGTGAAG TGCCGGCAAG CCCAAGCTGA
|
|---|
| Protein sequence | MPRGIVKWFN DVKGFGFIEP EEGGEDVFAH FSAIQMEGFR TLKQGSSVDF DLVDGPKGKL
AQNIRANQIA AGEVPASPS
|
|---|
| |