| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1645 |
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| Symbol | |
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| ID | 6161678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1749455 |
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| End bp | 1751887 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664399 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001790677 |
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| Protein GI | 171058328 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.321761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCTACTT TGGCGCCGCT GCTGTCGGTG CTGCTGTTCC TGGCCGCGAT CGTCGCGGCG
TTCTGGTACT TGCGCAATGA GGAAGTCGAG CGGGAAGTCG AGTCGGTCAA GCGCGACGCC
GAACTGGTGC AGCAGCAGAT CCGCCTGCGC CTGATCGAGA ACCAGGAACA GCTGGTGCGC
ATCGCGCGCG AGGTCATGAC ACGCGCCACC GACCGCGACG AATTCCTGTC GCAGAGCGCG
AGCCTGGTGC GCAGCCGCCC GGAGATCGTC GGCATCAGCT GGCTCGGCTC GACCCAGCAG
GTGGTGGCGC GCCACGTGGC GCCCGACCTC GCGGCGGCGA TGCCGCGCCT GGCCATGCCC
ACCACCAATC AGACCGGCGA GCTCGGCAAG CCGCAGGCCA CCCAGGTGGC GTTCGACGAC
GCCCGCGAGC TGCGCCTGCC GGTCTACTCG CGGCCGTTCC GGCACGACGA GCACCTGATC
GTGTTCCAGG TGCACGTGCC GCTGATCGAC CACGGCGCCT TCGCCGGCAC GCTGGTGGCC
GAGTATTCGA TCGAGGCGCT GCTGCGCTAT TTCGTGCCGC CCGACGTCTC GCGCCGCCAC
GTCATCAGCC TGCTCGACAC CAACGACAAC GTGCTCGCCA GCACCATGGC CAGCCAGCCC
GGGCGGGTGC GCGCCAAGCT GATCTACGAC GTCGCGTTCG CCCCGGTCGG CCACGGCACC
ACGCTGCGCG GCGAGGGCTA CCGCACCTCG TTCGGGCTGA TCGGCAACAC GCTGTTCTGG
ATGGTGCTGT CGCTGTCGGT GCTGACCGTC TGGATGCTGC TGGGCACCTG GCGCCACATG
CGCCGCCGGC TGCAGATCCA GGGCGCGCTG GTGCAGGAGA CCAACTTCCG CCGGGCGATG
GAAAACTCCA TGCTGACGGG CATGCGGGCG ATGGACCAGG AAGGCCGCAT CACCTACGTC
AACCCGGCCT TCTGCGCGAT GACCGGCTTC AGCGAGGCCG AGCTGATCGG CCGCCTGCCG
CCCTACCCGC ACTGGCCGCA CGACCGCCTC GAGGAGAGCA ACCGCCTGCT GCAGCAGGAA
CTCGCCGGCC GCAGCCCGGC CGGGGGCATC GAGGTGCGCG TGCTGCGCCG CGACGGCACG
CAGTTCGACG CCCGCATGTA CGTGTCGCCG CTGATCGACG CGCGCGGCCA GCAGACCGGC
TGGATGACCT CGATGACCAA CATCACCGAG GCCAAGCGCA TCCGCGACCA GCTGACCGCC
TCGCACGAAC GCTTCACCAC CGTGCTCGAA GGGCTGGACG CGGCGGTCTC GGTGCTGTCG
GTGCAGCACG GCGAGCTGCT GTTCGCCAAC CGCTCGTACC GGCTGTGGTT CGGCGCCGAC
GCGCACTGGC ATGCCCAGCT GGCCGGCATG CAGGCCGCCA ACAACAGCGG CGGCCATGTC
GAGGACGATG TCGACGGCCT GTCGGGCCTG CCGACCGCCG AACTCACCGA CGTGAGCGCC
GACACCCGCG AGGTCTACGT CGACTCGCTG CAGAAGTGGT TCGACGTGCG CGCCCGCTAC
CTGCAGTGGA CCGACGGCCG GCTGGCGCAG ATGCTGATCG CCACCGACAT CACCGCGCGC
CGCCGCATGG AAGAGCTCTC GGCCCAGCAG GCCGAACGCG CCCAGGTGAC GAGCCGGCTG
GTGACGATGG GCGAGATGGC GTCGTCGGTG GCGCACGAAC TGAACCAGCC GCTGGCAGCG
ATCGCCAACT ACTGCAGCGG CATCATCACG CGACTGAAGG CGGGCAAGCT CAACGACGAG
GAACTGCTCG GCGCACTCGA GAAGACCGCC CGCCAGGCGC ACCGCGCCGG CCAGATCATC
CACCGCATCC GCGCCTTCGT GAAACGCAGC GAGCCGCAGC GCCAGGCCGC GCACGCCACC
GACATCGTCG ACGACACGCT CGAGCTCGCC GGCATCGAGC TGCGCCGGCG CAACGTCTCG
CTGCAGACCT ATGTGGCGCG GCGCCTGCCG GTGCTGCAGG TCGACCCGAT CCTGATCGAG
CAGGTGCTGC TCAACCTGAT CAAGAACGCC GCCGAGGCGA TCGACAGCGC CCAGATGCCG
CCCAAGCGTC GCAACATCGA GCTGCGCGTG GTGCCCAAGC ACACGCCCGA ACTCGGGGGC
GTGATCGAGT TCAGCGTGAC CGATACCGGC CCCGGTCTGA AAGAGGAAGT GATCAATCGG
CTCTACGAAG CCTTCTTCTC GACCAAGACC GAAGGCCTGG GCATCGGGCT GTCCCTGTGC
CGCTCGATCA TCGAGTCGCA CAAGGGCAGG ATCAAGGCGG AGAACCTCTA CAATTCCGAG
ACCGTGGTGG GCTGTCGTTT CACCGTGCTG CTGCCCGTGA GCGCACCGTT GCCGATGGTC
CTCGAGTCCA ACAAATCCAG CGAGCCTTCA TGA
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| Protein sequence | MATLAPLLSV LLFLAAIVAA FWYLRNEEVE REVESVKRDA ELVQQQIRLR LIENQEQLVR
IAREVMTRAT DRDEFLSQSA SLVRSRPEIV GISWLGSTQQ VVARHVAPDL AAAMPRLAMP
TTNQTGELGK PQATQVAFDD ARELRLPVYS RPFRHDEHLI VFQVHVPLID HGAFAGTLVA
EYSIEALLRY FVPPDVSRRH VISLLDTNDN VLASTMASQP GRVRAKLIYD VAFAPVGHGT
TLRGEGYRTS FGLIGNTLFW MVLSLSVLTV WMLLGTWRHM RRRLQIQGAL VQETNFRRAM
ENSMLTGMRA MDQEGRITYV NPAFCAMTGF SEAELIGRLP PYPHWPHDRL EESNRLLQQE
LAGRSPAGGI EVRVLRRDGT QFDARMYVSP LIDARGQQTG WMTSMTNITE AKRIRDQLTA
SHERFTTVLE GLDAAVSVLS VQHGELLFAN RSYRLWFGAD AHWHAQLAGM QAANNSGGHV
EDDVDGLSGL PTAELTDVSA DTREVYVDSL QKWFDVRARY LQWTDGRLAQ MLIATDITAR
RRMEELSAQQ AERAQVTSRL VTMGEMASSV AHELNQPLAA IANYCSGIIT RLKAGKLNDE
ELLGALEKTA RQAHRAGQII HRIRAFVKRS EPQRQAAHAT DIVDDTLELA GIELRRRNVS
LQTYVARRLP VLQVDPILIE QVLLNLIKNA AEAIDSAQMP PKRRNIELRV VPKHTPELGG
VIEFSVTDTG PGLKEEVINR LYEAFFSTKT EGLGIGLSLC RSIIESHKGR IKAENLYNSE
TVVGCRFTVL LPVSAPLPMV LESNKSSEPS
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