| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1641 |
|---|
| Symbol | |
|---|
| ID | 6161288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1743563 |
|---|
| End bp | 1745830 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641664395 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001790673 |
|---|
| Protein GI | 171058324 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.130236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCG CGCCGCATGT CGAGGTCAGC AGCCTCTGGC CTCCCACCGG CACGTTGTCG
GCCATCCCCG CACAGCAGGC CGACCGCCAG CGCGTCGAGA TGCTCGTGCT GCAGGCGGTG
CAGGCGCAGC CCTGGCTGAT GTGGCTGATC GCCGCGCTGG GCGCCTGGGT GCTGTCGTCG
CTGGCGATGT GGCTGTCGCG CTTTCCCGGC CAGGTGGCCT CGCTCTGGTA CATGAACGTG
TGGGGCCTGG CGCTGCTGCT GCCGGTGCCG CGGCGCCAGT GGCCGGGCCT CCTGCTGGCC
CTGGCCCTCG GCAATCTGGC GGCCAACCTG GCGTTCGGCG ACAGCCTGCT GGAGGCGTTG
CGCTACCTGC CGCCCAACCT GATCGAGATG CTGCTCGGCG CCTGGCTGCT GCGGGGCAGC
GAGTCCTATC GGCGCATCGC GTCCAGCCCG GTCGACGGCC TGAAGGTGCT GCTGCGCGGC
AGCTTGCTGC CGGTGCTGGC GGGGTCGGCG ACCGCCGTGC TGACGCTCGG CTGGCAGGAC
GATACGCCGC TGTTTCGCAT CGCCCTGACC TGGTTCGAGA GCACGCTGGT CGGTTCGGTC
ACCTTGCTGC CGCTGGTGCT GGCCGTGCTG GCCGCCGAGC GGGGCGCCGT GCGACGCGAC
TTTGCCGATC CGCGCGCCTG GGCCTTTGCC CTGGTGAGTG TCGGCGTCGG CGTGTTCTGT
CTGCTGCAGC TGCCGTTTCC GTTCGTCTAT CTCACGCTGC CGCTGGTGCT GGCTGCGGTG
CAGCTGCGCT TCATGGCGGT GGCCGCGCTG GTCTGGCTGA TGGCGATGGT GGTGGGCACG
CTGATCGCGC AAGGGCTGTT CGTCGCGCCG CCGCAGACGG CCTACTGGCA GCAGCTGCTG
GTCTATGCGC CGCTGCTGGC GGCCTTGTTG CCGCCCTTGC TGCTGGCCGC CGCGGTCGAG
CAGGCGCGCA ACCACCACGG CGAACTCTCG CGCAGCCGCG AGCGCCTGCG CACGCTCTAC
GAGCGCACGC CCGCGATGAT GGTGTCGACC GATCCGGACG GCCGCCTGCT GAGCGTGAGC
CGGCTCTGGC TCGAGCGCAT GGGGTTGCGG CGCGACGATG TCATCGGTCG CAAGCTGGTC
GACTTCCTGG CGGCCGAATC ACGCCGCCGC ACGCTCACCC GCACCTGGCC CGATCTGCTG
GCCGCCGGGC GCTGCCGCGA CGTCGAGTAC CGCCTGATGC GCAGCGACGG CCAGCGCATC
GACGTGCTGC TGTCGGCCAC CACCGAGCGC GACGCCGACG GCCGCATCAC GCGCACCCAC
GCGGTGCTCG AGGACATCAC CCGCAAGCGC CTGGCCGAGG AGCTGGAGGC CGAGCACGAG
CGCAGCAAGG TCACGCTCGA GAGCATCGCC GACGCGGTGA TCACCAGCGA TCCGCAGGGC
CGCATCCTCT ATCTCAACCC GGTGGCCGTG ACCATGATCG GCCAGCCCGA GGAGCAGGTG
CGCGGCCGGC TCTATGGCGA GGTGCTGCGC CGCCGTGATG TCGAGACCGG CGCCGAACTG
CCCGACCCGG TCGCCCTGTG CCTGCACCAG CGCAAGCGCC TGGCCTTGCC GCAGCGTGTG
CGGCTGGCCC ATGCCGAAGG CAGCGAGCAC GTGGTGCAGG AGTCGGTCTC GCCGATGTTC
GCCGCGGGCG GGCAGCTGAT CGGCGCGGTG GCGGTGATGC ACGACGTGAC CGAAGCGCAC
CAGCTGGCGC TCAAGCTCGC GCACCGCGCG CAGCACGACG TGCTGACCGG CCTGCCGAAT
CGCCTGCTGC TGCACGACCG GCTGCACCAG GGCCTGCAAC TGGCGCGCCG CAACCGCACC
GTGCTGGCGC TGATGTTCTT TGACCTGGAC CGCTTCAAGG CCGTCAACGA CAGCCACGGG
CACGCCACCG GCGACGAACT GCTGTGCCAG GTGGCCGATC GCCTGCTCAA GCAGCTGCGT
GCCACCGACA CTGCCTGCCG GCTCGGCGGC GACGAGTTCG TGGTGCTGCT GTCGCAGGTC
GAGCAGGCGA GCGACGCCGG CGACGTGGCG ACGCACCTGC TCGAAGCGCT GTGCAAGCCG
TATCAGCTGG GCAAGCACCA GGCCGACATC AGCGCGAGCA TCGGCATCGC GTGTTTCCCG
CAGGACGGCA CCGACGAGGC CACCCTGATG CGCAACGCCG ATGCGGCCAT GTACCAAGCC
AAGCAGCAGG GCCGCAACCG GGTGGTGTTC TTCAAGCGGC CCGATTGA
|
|---|
| Protein sequence | MSSAPHVEVS SLWPPTGTLS AIPAQQADRQ RVEMLVLQAV QAQPWLMWLI AALGAWVLSS
LAMWLSRFPG QVASLWYMNV WGLALLLPVP RRQWPGLLLA LALGNLAANL AFGDSLLEAL
RYLPPNLIEM LLGAWLLRGS ESYRRIASSP VDGLKVLLRG SLLPVLAGSA TAVLTLGWQD
DTPLFRIALT WFESTLVGSV TLLPLVLAVL AAERGAVRRD FADPRAWAFA LVSVGVGVFC
LLQLPFPFVY LTLPLVLAAV QLRFMAVAAL VWLMAMVVGT LIAQGLFVAP PQTAYWQQLL
VYAPLLAALL PPLLLAAAVE QARNHHGELS RSRERLRTLY ERTPAMMVST DPDGRLLSVS
RLWLERMGLR RDDVIGRKLV DFLAAESRRR TLTRTWPDLL AAGRCRDVEY RLMRSDGQRI
DVLLSATTER DADGRITRTH AVLEDITRKR LAEELEAEHE RSKVTLESIA DAVITSDPQG
RILYLNPVAV TMIGQPEEQV RGRLYGEVLR RRDVETGAEL PDPVALCLHQ RKRLALPQRV
RLAHAEGSEH VVQESVSPMF AAGGQLIGAV AVMHDVTEAH QLALKLAHRA QHDVLTGLPN
RLLLHDRLHQ GLQLARRNRT VLALMFFDLD RFKAVNDSHG HATGDELLCQ VADRLLKQLR
ATDTACRLGG DEFVVLLSQV EQASDAGDVA THLLEALCKP YQLGKHQADI SASIGIACFP
QDGTDEATLM RNADAAMYQA KQQGRNRVVF FKRPD
|
|---|
| |