Gene Lcho_1638 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1638 
Symbol 
ID6161285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1741317 
End bp1741910 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content68% 
IMG OID641664392 
Productphosphoheptose isomerase 
Protein accessionYP_001790670 
Protein GI171058321 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0279] Phosphoheptose isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.0835422 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAGAGC AGCGCATCCA ACAGCAATTT TTTGACAGTG CAGACCTCAA GTACGCCGCC 
GCAGACGCCC TGACGCGGCC GATCACCGAA GCCGTCAATT CACTGCTCGG CTGCATCACC 
GCGGGCGGCA AGGTGCTGGC CTGCGGCAAC GGCGGCTCGG CCGCCGAGGC CCAGCGGGTC 
GCCTCGCTGC TGGTGGGCCG CTTCGAGCGC GAACGCCCCG GGCTGGCGGC CATGAGCCTG 
TCGAGCGACA CCTCGGTGCT GACCGGCGTC GGCCGCGACC AGGGCCTCGA CCAGATCTTC 
GCGCGCCAGG TGCTGGCACT CGGCCATCCG GGCGACGTGC TGCTGGCGCT GAGCACCACC 
GGCAGCGCCG CCAACGTGCT GGCCGCAGTC GAAGCCGCCC ACGAGAAGGA AATGACCGTC 
ATCGCCCTCA CCGGCCAGGG TGGCGGCCAG ATGAACCAGA CGCTGGCCGA GACCGACGTG 
CACATCTGCG TGCCGCACCA GCGCAGCGCC CGCATCCTCG AAGTCCATCT GCTCGTCATC 
CACTGCATCT GCGATGCGAT GGACCTGCAA CTGCTCGGAG AACATGACCA ATGA
 
Protein sequence
MLEQRIQQQF FDSADLKYAA ADALTRPITE AVNSLLGCIT AGGKVLACGN GGSAAEAQRV 
ASLLVGRFER ERPGLAAMSL SSDTSVLTGV GRDQGLDQIF ARQVLALGHP GDVLLALSTT 
GSAANVLAAV EAAHEKEMTV IALTGQGGGQ MNQTLAETDV HICVPHQRSA RILEVHLLVI 
HCICDAMDLQ LLGEHDQ