Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1631 |
Symbol | |
ID | 6163453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1733111 |
End bp | 1734154 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641664385 |
Product | twitching motility protein |
Protein accession | YP_001790663 |
Protein GI | 171058314 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0179805 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATCA CACAGCTGCT GGCGTTTTCG GTCCGCAACA AGGCTTCGGA TCTGCACCTC TCCGCCGGTT TGCCGCCGAT GATCCGGGTG CATGGCGACG TGCGGCGCAT CAACGTCGAT CCGCTCGGGC ACAAGAACGT GCACGAGATG GTCTACGACG TCATGAACGA CGCCCAGCGC AAGGTCTTCG AGGAGACGCT GGAGTGCGAC TTCTCGTTCG AGATCCAGGG CCTGTCGCGC TTCCGGGTCA ATGCCTTCAA CCACAACCGC GGCGCCGGCG CGGTGTTCCG GACCATCCCG AGCAAGATCC TGACGCTCGA GGACCTGAAC TGCCCGAAGG TGTTCGCCGA GCTGTCGCTC AAGCCGCGCG GCATGGTGCT GGTGACCGGG CCGACCGGCT CGGGCAAGAG CACCACGCTG GCGGCGATGG TCAACCACCG CAACGAGAAC GAATACGGTC ACATCCTGAC GGTCGAAGAC CCGATCGAGT TCGTGCACGA GTCCAAGAAG TGCCTGATCA ACCAGCGCGA GGTCGGGGCG CAGACGCTGT CGTTCTCGAA CGCGCTGCGC TCGGCGCTGC GCGAGGATCC GGACGCGATC CTGGTGGGTG AGCTGCGCGA TCTCGAGACC ATCCGCCTGG CGCTGACCGC CGCCGAAACC GGCCACCTGG TGTTCGGCAC GCTGCACACC TCGAGCGCGG CCAAGACGAT CGACCGCATG GTCGACGTGT TCCCCGCGGC CGAGAAGGAG ATGGTGCGGG CGATGCTGTC GGAGTCGCTG GTGGCGGTGA TCTCGCAGTC CCTGCTCAAG ACCCGCGACG GCAGCGGCCG GGTGGCGGCG CACGAGATCA TGCTGGGCAC CGCCGCCATC CGCAACCTGA TCCGCGAGAA CAAGGTGGCG CAGATGTACT CGATCATCCA GACCGGCCAG GCGCAGGGCA TGCAGACGCT CGACCAGTGC CTGGCCGATC TGGTGCGGCG CGGCCAGGTC GCGGCGTCCG AGGCGCGCAC GATGGCGCGC ATGCCCGAGA ACTTCCCGGG TTGA
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Protein sequence | MDITQLLAFS VRNKASDLHL SAGLPPMIRV HGDVRRINVD PLGHKNVHEM VYDVMNDAQR KVFEETLECD FSFEIQGLSR FRVNAFNHNR GAGAVFRTIP SKILTLEDLN CPKVFAELSL KPRGMVLVTG PTGSGKSTTL AAMVNHRNEN EYGHILTVED PIEFVHESKK CLINQREVGA QTLSFSNALR SALREDPDAI LVGELRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRM VDVFPAAEKE MVRAMLSESL VAVISQSLLK TRDGSGRVAA HEIMLGTAAI RNLIRENKVA QMYSIIQTGQ AQGMQTLDQC LADLVRRGQV AASEARTMAR MPENFPG
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