Gene Lcho_1631 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1631 
Symbol 
ID6163453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1733111 
End bp1734154 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content66% 
IMG OID641664385 
Producttwitching motility protein 
Protein accessionYP_001790663 
Protein GI171058314 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0179805 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCA CACAGCTGCT GGCGTTTTCG GTCCGCAACA AGGCTTCGGA TCTGCACCTC 
TCCGCCGGTT TGCCGCCGAT GATCCGGGTG CATGGCGACG TGCGGCGCAT CAACGTCGAT
CCGCTCGGGC ACAAGAACGT GCACGAGATG GTCTACGACG TCATGAACGA CGCCCAGCGC
AAGGTCTTCG AGGAGACGCT GGAGTGCGAC TTCTCGTTCG AGATCCAGGG CCTGTCGCGC
TTCCGGGTCA ATGCCTTCAA CCACAACCGC GGCGCCGGCG CGGTGTTCCG GACCATCCCG
AGCAAGATCC TGACGCTCGA GGACCTGAAC TGCCCGAAGG TGTTCGCCGA GCTGTCGCTC
AAGCCGCGCG GCATGGTGCT GGTGACCGGG CCGACCGGCT CGGGCAAGAG CACCACGCTG
GCGGCGATGG TCAACCACCG CAACGAGAAC GAATACGGTC ACATCCTGAC GGTCGAAGAC
CCGATCGAGT TCGTGCACGA GTCCAAGAAG TGCCTGATCA ACCAGCGCGA GGTCGGGGCG
CAGACGCTGT CGTTCTCGAA CGCGCTGCGC TCGGCGCTGC GCGAGGATCC GGACGCGATC
CTGGTGGGTG AGCTGCGCGA TCTCGAGACC ATCCGCCTGG CGCTGACCGC CGCCGAAACC
GGCCACCTGG TGTTCGGCAC GCTGCACACC TCGAGCGCGG CCAAGACGAT CGACCGCATG
GTCGACGTGT TCCCCGCGGC CGAGAAGGAG ATGGTGCGGG CGATGCTGTC GGAGTCGCTG
GTGGCGGTGA TCTCGCAGTC CCTGCTCAAG ACCCGCGACG GCAGCGGCCG GGTGGCGGCG
CACGAGATCA TGCTGGGCAC CGCCGCCATC CGCAACCTGA TCCGCGAGAA CAAGGTGGCG
CAGATGTACT CGATCATCCA GACCGGCCAG GCGCAGGGCA TGCAGACGCT CGACCAGTGC
CTGGCCGATC TGGTGCGGCG CGGCCAGGTC GCGGCGTCCG AGGCGCGCAC GATGGCGCGC
ATGCCCGAGA ACTTCCCGGG TTGA
 
Protein sequence
MDITQLLAFS VRNKASDLHL SAGLPPMIRV HGDVRRINVD PLGHKNVHEM VYDVMNDAQR 
KVFEETLECD FSFEIQGLSR FRVNAFNHNR GAGAVFRTIP SKILTLEDLN CPKVFAELSL
KPRGMVLVTG PTGSGKSTTL AAMVNHRNEN EYGHILTVED PIEFVHESKK CLINQREVGA
QTLSFSNALR SALREDPDAI LVGELRDLET IRLALTAAET GHLVFGTLHT SSAAKTIDRM
VDVFPAAEKE MVRAMLSESL VAVISQSLLK TRDGSGRVAA HEIMLGTAAI RNLIRENKVA
QMYSIIQTGQ AQGMQTLDQC LADLVRRGQV AASEARTMAR MPENFPG