| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1622 |
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| Symbol | |
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| ID | 6160493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1723142 |
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| End bp | 1723858 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664376 |
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| Product | RNA polymerase, sigma 28 subunit, FliA/WhiG |
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| Protein accession | YP_001790654 |
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| Protein GI | 171058305 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00524411 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACACCG CCACCGGACG ACCCGACGTC AATTCGCTGC TCAAGCAGTA CAGCCCGCTG
GTGCGCCGGC TGGCGCATCA GATGATCGCC AAGCTGCCCG CCAACGTCGA GATCGACGAC
CTGATCCAGG TCGGCATGAT CGGCCTGACC GACGCGCTCA GCCGCTTCGA CATCGGCCAG
GGCGTGATGT TCGAGACCTT CGCCACCCAG CGCATCCGCG GCGCCATGCT CGACGAGCTG
CGCGGCTCCG ACTGGATGAG CCGCGGCAAC CGCAAGCACC AGCGCGACAT CGAGGGCGCC
GTGCACCGCC TCGAGCAGAA GCTCGGCCGC ACGCCGCAGG AAAGCGAGAT CGCCAAGGAA
ATGGGCATCA CGCTGCTCGA GTACCAGGAC CTGCTCAACC GGGTGCGTGG CACGCAGCTG
ATCTACCTCG AGGATATGGG CGGCGCCGAC GGCGACAACG ACTACCTCGA CCGCCACGTG
GCGGCCGACA CCGGCGGCGA CCCGCTGGCC CGCCTCAACG ACCACCGCAT GCGCCAGGCG
CTGGTCGATG CCATCAAGAA CCTGCCCGAA CGCGAGCAGT ACGTGATGAG CATGTACTAC
GAAGAAGACA TGAACCTGAA GGAAATCGCC GCCGTGCTGG GCGTGACCGA ATCGCGGGTC
TGCCAGCTGC ACAGCCAGTC GATCGCCCGC CTGCGCGCCA AGCTGCGCAC CTGGTGA
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| Protein sequence | MYTATGRPDV NSLLKQYSPL VRRLAHQMIA KLPANVEIDD LIQVGMIGLT DALSRFDIGQ
GVMFETFATQ RIRGAMLDEL RGSDWMSRGN RKHQRDIEGA VHRLEQKLGR TPQESEIAKE
MGITLLEYQD LLNRVRGTQL IYLEDMGGAD GDNDYLDRHV AADTGGDPLA RLNDHRMRQA
LVDAIKNLPE REQYVMSMYY EEDMNLKEIA AVLGVTESRV CQLHSQSIAR LRAKLRTW
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