Gene Lcho_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1616 
Symbol 
ID6163506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1714963 
End bp1715622 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content67% 
IMG OID641664370 
Productcytochrome c class I 
Protein accessionYP_001790648 
Protein GI171058299 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.016754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA CGCACTACGT CCTGATGGCG CTGGCGATGA CGGCAGGTCT GTCGTCGGTT 
CAGGCACAAG AAGCCAAGCC GGGCGATGCG GCTGCCGGAC AGACGAAAGC GGCCATGTGC 
ATCGGCTGTC ACGGCATCCC GGGCTATCGG GCCAGTTTCC CGGAGGTCTA CCAGGTGCCG 
ATGATCTCGG GCCAGGGTGG CAAGTACATC GCGGCCGCGC TCGCCGCCTA CAAGAAGGGC 
GACCGCAAGC ACCCGACGAT GCGCAGCATC GCCGGCTCGC TGACCGAGCA GGACGTGGCC 
GACCTCGCCG CCTTCTACGA GTCGCAGGGC GCTGGTGCCG CCTCTGCCGC AACCGTCCAG 
CCGAGCGGCC AGGTGGCCGA GCTGCTGACC AAGGGCAATT GCGCGGCCTG CCACGGCGAC 
AACCTCAACA AGCCGATCGA CGGCAGCTAT CCCAAGCTGG CCGGCCAGCC CGCCGACTAC 
CTGTTCGCGG CGCTGAAGGC CTACAAGGTC GACGGCACGT CGCACGTGGT CGGCCGCGCC 
AACGCCATCA TGGGCGCGCA GGTCAAGCCG TACAGCAACG CCGAGCTGAA GGTGCTGGCC 
AAGCACATCG CCTCGCTGCC GTCCGACCTG AAGGTCGTGC CGAATCCGAA GTTCCGCTGA
 
Protein sequence
MKKTHYVLMA LAMTAGLSSV QAQEAKPGDA AAGQTKAAMC IGCHGIPGYR ASFPEVYQVP 
MISGQGGKYI AAALAAYKKG DRKHPTMRSI AGSLTEQDVA DLAAFYESQG AGAASAATVQ 
PSGQVAELLT KGNCAACHGD NLNKPIDGSY PKLAGQPADY LFAALKAYKV DGTSHVVGRA 
NAIMGAQVKP YSNAELKVLA KHIASLPSDL KVVPNPKFR