| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1614 |
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| Symbol | |
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| ID | 6163504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1711177 |
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| End bp | 1713492 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664368 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001790646 |
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| Protein GI | 171058297 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0431388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCACC TGCCGCTGGC CGCCGGCACC GCGCTGGCCA GCACGCTGGT GATCGCCGCC
TTCACGCCGG GTGTCACCGC CGACACCGGA CTGCTGGTGT GGCTGGTGAG CGTGGTGACC
CTGCTGCTGA TCCACGGCCG GCACTGGTGG CAGTGGCGCC AGCGGCGGCA GGCCGGCCGC
GTCTCGACCC GCACCCTCAC GGCGCTGATC GCCCATGCCG GCGTGTTCGC CACCTTGTGG
GGCGCCGTGC CGGGCTGGAT GCTGGCGCAG GCCAACGCCG GCCAGCACGC CCTGCTGGCC
GGCAGCCTGA CCGGCATGCT GTGCATCGGC GGCGTCACGC TGGCCGCGGT GCCGGCCGCC
GCCTACGCGT ACCTGGGCGG ACTGAGCCTG AGCCTGATCG TCAGCCAGTT CATGCAGCCG
AGCGCCCAGC TGGGCGCCGG CGCGGTGCAG TGGGCCGGCT GTGCCGCCGT GATGGTGGGC
GGCGTGCTGA TGATGAGCCG CACCGTGCGC GCCCGCGTGC AGGCTGAGAT GCAGGCCGAA
CACCAGGGCC AGCTGATCGG CCTGCTGCTG CGCGATTTCG GGGAACAGGG CAGCGACCTG
CTGTGGCAGA TCGACGAACG CGGCTGCCTG TCGCAGGTCA GCCGGCGCCT GGCCGATGCG
CTGGGCCGCC CGCTCGCCGA ACTGCAGGGC CGCCCGCTGC TGGAGGTGCT GACCGAACTG
CAGCAGGGCC TGTCCGACAT CGACCGCGAC GCCACCCAGA TGCTGCAAAC CTGCCTGATC
GAGGGCCAGC CGTTTCGCGA CGTGCTGATG CCGATGCGCG TCAAGGGCCA GCCGCGCTGG
TGGTCGCTGA CCGCCAAGCC GCTGGTCAAC GAACGCGGCG TGGCGATGGG CTGGCGCGGC
GTGGCGCGCG ACGTCACGCA GGCCCGCATG GCCGACCGGC GCATGGCCTG GCTGGCGCAC
TTCGACACCC TCACCGGCCT GACCAACCGG GCGCACTTCC GCGTGCTGCT CGAGGCGGCC
CTGCAGCAGG CCCGGTCGCC GGAACAGGGC GGCGCGGTGA TGTGCCTCGA CCTGGATCAT
TTCAAGACCG TCAACGACAC CCTCGGCCAC CCGACCGGCG ACGCCCTGCT GGTGGAGGTG
GCGCGCCGCC TCAAGGCCGC GGTGGGCCCC GGCGATGTCG TGGGCCGGCT CGGCGGCGAC
GAGTTCGCGG TGCTGCTGCG CAACGCCGCG GACGTGCAGC AGATCAGCGC GACCGCGCAG
CGCATCCTCG ACGCCCTGCG CGAGCCCTGC GCCGCGCTGG GCGCGCAGGT GCCGGTGCGC
CTGAGCATAG GCATCGCGCG CTTCGCGCAG GACGGCGCCT CGGTCGACGA GCTGATGCAG
CACGCCGACC TGGCGCTGTA CGACGCCAAG GCCAGCGCGC CGGGCTCGAT GAAGTTCTTC
GCCCCGCGCA TGGGCGAGCA GGTGCGCCGC CGCCTGGTGC TCGAGCGCGA CCTGCGCGAG
GCGATCGACA AGCAGCAGCT CTCGCTGCAC TACCAGCCCA AGGTCGACCT GCAGACCTGG
GAGGTCACCG GCTTCGAGGC GCTGCTGCGT TGGCGCCACC CCGAGCACGG CAACATCCCG
CCCAGCGAGT TCATCCCGGT GGCCGAGGAC TCGGGCCTGA TCCTGCCGAT CGGCGAGTGG
GTGCTGACCC AGGCGTGCCA GCAGGCGGCC CGCTGGCCGG CGCCGATGCA GGTGGCGATC
AACATCTCGC CGGTGCAGGT GATGGCGCAG AACCTGCCGG AAGCGGTCGG CCGCGCCCTC
AAGGCCAGCG GCCTGGCGCC GCGGCGGCTC GAGCTGGAAA TCACCGAATC GGTCTTCATC
AACGAGACCC GCGGCACCGT GGACCGCCTG CACGCCCTGC GCAAGGTCGG GGTGCAGATC
GCGCTCGACG ACTTCGGCAC CGGCTACTCG TCGCTGGCGT ACCTGCGCCG CTTCCCGTTC
GACACCCTCA AGATCGACCG CGCCTTCGTG CGCGAGGTGC TGCTCAGCCG CGACGCCCGG
GCGATCGTGC GCAACATCCT GGCGCTGGCC AAGTCGCTGC GCATGTCGAC CGTGGCCGAA
GGCGTCGAGG AGCCGGCCCA GGCGTCGGTG CTGGGCAACG AAGGCTGCGA TCTGGTACAG
GGGTTCCTGG TGTCGCGGCC GATGCCGGCC GACGAAGTGA CCGGATTCCT GCTCGACTGG
GCCAAATGCC GGCATCCGCA GCCCCCGCGC GAGGTCGTGC TGGCCAACAC CGATGTCGCC
GCCCTGCCCC TGACGCAGCC GGCGATGGAC CTCTGA
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| Protein sequence | MRHLPLAAGT ALASTLVIAA FTPGVTADTG LLVWLVSVVT LLLIHGRHWW QWRQRRQAGR
VSTRTLTALI AHAGVFATLW GAVPGWMLAQ ANAGQHALLA GSLTGMLCIG GVTLAAVPAA
AYAYLGGLSL SLIVSQFMQP SAQLGAGAVQ WAGCAAVMVG GVLMMSRTVR ARVQAEMQAE
HQGQLIGLLL RDFGEQGSDL LWQIDERGCL SQVSRRLADA LGRPLAELQG RPLLEVLTEL
QQGLSDIDRD ATQMLQTCLI EGQPFRDVLM PMRVKGQPRW WSLTAKPLVN ERGVAMGWRG
VARDVTQARM ADRRMAWLAH FDTLTGLTNR AHFRVLLEAA LQQARSPEQG GAVMCLDLDH
FKTVNDTLGH PTGDALLVEV ARRLKAAVGP GDVVGRLGGD EFAVLLRNAA DVQQISATAQ
RILDALREPC AALGAQVPVR LSIGIARFAQ DGASVDELMQ HADLALYDAK ASAPGSMKFF
APRMGEQVRR RLVLERDLRE AIDKQQLSLH YQPKVDLQTW EVTGFEALLR WRHPEHGNIP
PSEFIPVAED SGLILPIGEW VLTQACQQAA RWPAPMQVAI NISPVQVMAQ NLPEAVGRAL
KASGLAPRRL ELEITESVFI NETRGTVDRL HALRKVGVQI ALDDFGTGYS SLAYLRRFPF
DTLKIDRAFV REVLLSRDAR AIVRNILALA KSLRMSTVAE GVEEPAQASV LGNEGCDLVQ
GFLVSRPMPA DEVTGFLLDW AKCRHPQPPR EVVLANTDVA ALPLTQPAMD L
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