Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1596 |
Symbol | |
ID | 6162615 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1692834 |
End bp | 1693991 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664350 |
Product | response regulator receiver sensor signal transduction histidine kinase |
Protein accession | YP_001790628 |
Protein GI | 171058279 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4564] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.00430448 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAAAGAC AGACCAAGCT GCGCCGCGTG CGTATCCTCC ACCTCGAGGA TTCCGAGCTC GACCACCAGT TGCTGCTCGC CCACCTGCGC CGCGGCGGCA TCGAGCCGTC GATGCGCCGG GTCGACACCG AAGCCGAATA CATGGCCGCA CTCGGCCACG CCTGGGACGC GGTGATCTCG GACTACAACC TGCCGGGCTT CTCGGGCCTG GTGGCGCTGG AGCTGCTGCG CGAACGCGAC AAGCTGATGC CCTTCATCCT GGTGTCGGGC GAGATCGGCG AGGACACCGC CGTCGAGGCG ATGCGCAACG GCGCCTCCGA CTACCTGCTC AAGAGCAACC TGGCACGGCT GGTGCCGGCG CTGATGCATT CGGTCGACGC CTGCGAGACC CAGCGGGCCC GCCAGCGCGC CGACCACGAG CTGGCGCAAT CGCGTCGTCG CCTGTCCGAG CTGGCCCAGC ACCTGCAAAC GAGCATCGAA CTCGAGCGCA CCGCGATCTC GCGCGAGATC CATGACGACG TCGGGGGCTC GCTGACGGCG GTCAAGTTCG ATCTGGCCTG GATCGTGCGG CATGCCGGCA ACGCCCAGAT GATCGAACGT GCACAACAGG CGCTGGAAAC TGTCAATCAC GCCATCGAGG CCAGCCAGCG CATCATGCAC AACCTGCGCC CGGCTATCCT CGAACAAGGA CTGGTGGCCG CGCTGCAATG GATGACGCAG CGTTTCGAGC GCCGCAGCGG CATATCGACC ACCTTCCGCA CCAGCCACGA CCACCTGCGC CTGCCGGCCG GCGTGCCGCT GGTGGCGTAC CGAACCGCAC AGGAAGCCTT GACCAACATC TCCAAGCACG CCCGAGCGAC CCGCGTCCAG GTCGACCTGA CGATGGCCGC CGGCGTGCTC TCGCTCGAGA TCAGCGACAA CGGCCGCGGC CTCGGCGTGG GAGACCTCGG CAAGGACCGC TCGTTCGGCA TCCGCGGCCT GCACGAACGG GCCGACACCG TGGGCGGCTG GGTCGACCTG TCCGGCACCC CGCAAGGCAC CACGCTGATC CTGTCGGTGC CGCTCGAACA GTCCGCCATG CGGCACCACG ACGCCGATGA CGGCGGGCCG CCGCCGCCCA CCAGCCCGCA CGATCCATCC ACCTGGGGAG ACCTATGA
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Protein sequence | MQRQTKLRRV RILHLEDSEL DHQLLLAHLR RGGIEPSMRR VDTEAEYMAA LGHAWDAVIS DYNLPGFSGL VALELLRERD KLMPFILVSG EIGEDTAVEA MRNGASDYLL KSNLARLVPA LMHSVDACET QRARQRADHE LAQSRRRLSE LAQHLQTSIE LERTAISREI HDDVGGSLTA VKFDLAWIVR HAGNAQMIER AQQALETVNH AIEASQRIMH NLRPAILEQG LVAALQWMTQ RFERRSGIST TFRTSHDHLR LPAGVPLVAY RTAQEALTNI SKHARATRVQ VDLTMAAGVL SLEISDNGRG LGVGDLGKDR SFGIRGLHER ADTVGGWVDL SGTPQGTTLI LSVPLEQSAM RHHDADDGGP PPPTSPHDPS TWGDL
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