| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1593 |
|---|
| Symbol | |
|---|
| ID | 6163000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1690776 |
|---|
| End bp | 1691342 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641664347 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001790625 |
|---|
| Protein GI | 171058276 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00157492 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCGA CCACCAAGGC CCTGTTGGGT GCTGCTGTCA TCGCCACCAG TTTCGGTGTT
GCGAACACGG CCCATGCCGA AGTCTTCAAT TTGCATTTCG ACGGCATCAG CAACCTCTAC
GGGACAGACA TCGTCGACGC GTATTTTCAG GTCACGACTT CCGGAGACGG AAGTTCTTTT
GAAGTACTCA CGGGCAACGA CTTCACGGGC ACGATCGACC TCACCTCCAG CTCCGACTTG
ACGGTCAGCA ACCTGCTTAA CATCAACAAC TTGGGCGGCA ATGACAACCA GTTCAAGGCC
ACAGCGAATT ATCTGACGAA TGACGGCATT TCATTTTCGG TGGGTGGTTT CCCCCGCTGG
AATCTGTTCC ACAGCACGGG CTCGTCCTAT GTGCTTCGCA CCGAGAACTA CAGTTCAGGC
GCTCCAACCG CATTCTGGTC AACCGGAACG CTGAGCGTCA CCGCCGTCCC CGAACCCGAA
ACCTACGCCA TGCTGCTCGC CGGCCTGGGT GTGATCGGTG CGATGAGCCG CCGCAAGAAA
GCACAAGCTG CCGCTGCGCA TACCTGA
|
|---|
| Protein sequence | MKSTTKALLG AAVIATSFGV ANTAHAEVFN LHFDGISNLY GTDIVDAYFQ VTTSGDGSSF
EVLTGNDFTG TIDLTSSSDL TVSNLLNINN LGGNDNQFKA TANYLTNDGI SFSVGGFPRW
NLFHSTGSSY VLRTENYSSG APTAFWSTGT LSVTAVPEPE TYAMLLAGLG VIGAMSRRKK
AQAAAAHT
|
|---|
| |