Gene Lcho_1581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1581 
Symbol 
ID6163018 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1680212 
End bp1680883 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content71% 
IMG OID641664335 
ProductTetR family transcriptional regulator 
Protein accessionYP_001790613 
Protein GI171058264 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.223478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACACCG AACGCAAGGC CCCGCGCCGC ACCGCCGAGC GCATCCTCGA CCACACGCTG 
GCGCTGTTCA ACCGCTACGG CGAGCCCAAC GTGTCGACCA CGCTGATCTC GGCCGAACTC 
AACATCAGCC CGGGCAACCT CTATTACCAC TACCCGGCCA AGGAGGAGCT GGTCAACGCG 
CTGATGAGCC GCTACGAGAC GGCGCTCGCG CAGGCGCTGG ACGCGGCCGG CCCGGCCAGC 
GACGCCGAAG GCTCCTGGCA GCTGGTGCCG GCGATGCTGC ACCTGGCCTG GGCCTACCGC 
TTCATCTTCC GCGACCTCAA CGACCTGCTG ACCCGCAACC GCCAGCTCGA AACCCGCTGC 
CAGGCCGCGC TGGCCTTGCA GCAGGCGGCG GTGCGCGAGC GCGTGGCCCG GCTGTGCGTG 
ATCGACGACG CCCCGCTCGA CAGCGACGAC GCCGACGCGC TGGCCACCTC GATCGTCGTG 
CTGCTGACCT ACTGGCTGTG TTTCGAATAC GTGCGCGACC CGCGCCGCGC GCTCGAACCC 
GACAACGAGG ACACCGCCGT CGACGCCGGC ACGCGCCAGG TGATGGCGCT GCTGTGGCCG 
TATCTGAGCG CCGAGCACCG GCGCCGGCTC AAGCCCGGAT TCGCACGGCG CAGCGGCACG 
CCGTCGGGCT GA
 
Protein sequence
MNTERKAPRR TAERILDHTL ALFNRYGEPN VSTTLISAEL NISPGNLYYH YPAKEELVNA 
LMSRYETALA QALDAAGPAS DAEGSWQLVP AMLHLAWAYR FIFRDLNDLL TRNRQLETRC 
QAALALQQAA VRERVARLCV IDDAPLDSDD ADALATSIVV LLTYWLCFEY VRDPRRALEP 
DNEDTAVDAG TRQVMALLWP YLSAEHRRRL KPGFARRSGT PSG