Gene Lcho_1580 details

Gene Information

• Locus tag: Lcho_1580
• ID: 6163017
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1678184
• End bp: 1680199
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641664334
• Product: ATP-dependent DNA helicase RecG
• Protein accession: YP_001790612
• Protein GI: 171058263
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1200] RecG-like helicase
• TIGRFAM ID: [TIGR00643] ATP-dependent DNA helicase RecG

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 0.338376
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACAAGC TCGGCCTCGA GCGCGACATC GATCTGGCAC TGCACCTGCC GCTGCGCTAC 
GAGGACGAAA CCCGCCTGAC GCCGCTGGCC GCCGCGCGCG AGGGCGACCT GCTGCACGTC 
GAGGGCGTGG TGCGCGAGGC CCGCATCGAG CTGCGCCCGC GCCGCCAGTT CATCGTCAAG 
CTGGTCGAGG CCCTGGGCGA CGCACCCGGC CGCATCGAGC TGATCCTGCG CTTCGTCAAC 
TTCTACCCCT CGCACCAGAA GACCTTTGCG CCCGGCACGC GGCTGCGGGT GCGCGGCGAG 
TTGCGCGGCG GCTTTTTCGG CCGCGAGATC GTGCACCCGG TGTTCAAGAC CGTCGAGCCC 
GGCGCGCCGC TGGCGCGCGA GCTGACCCCC GTCTACCCGA CCAGCGCGCA GCTGCCGCAG 
GCCTATCTGC GCAAGGCGGT GGCGGCGGGG CTGTCGCGGG CGCGGCTCGA CGAGATCCTG 
CCGCCGGACC TGCTGCCGGC CGGCCTGCCG CCGCTGCGCG AGTCGCTCTA CCTGCTGCAC 
CACCCGCCGG CCGACATCAG CCTGCATGCG ATCCAGGAGC GCGAGCACCC GGCCTGGCAG 
CGCATCAAGT TCGAGGAGCT GCTCGCCCAG CAGCTCTCGC AGCTGCAGGC CCAGCGCGAG 
CGCGCCAAGC TGCGTGCGCC GATGCTGCGC GGCTCGGCCG GTGGCCTGCA CGAAAAGCTG 
CTGGCGGCGC TGCCGTTCCA GCTGACCGGG GCGCAGCGGC GTGTCGCCGA GGAGATCGCC 
ACCGACCTCG GCCGGCCGCA GCCGATGAAC CGCCTGCTGC AAGGCGACGT CGGCTCGGGC 
AAGACGGTGG TGGCCGCGCT CGCCGCCGCG GTGGCGATGG ACGCGGGCTG GCAGTGCGCG 
CTGATGGCGC CCACCGAGAT CCTGGCCGAA CAGCATTTCC GCAAGCTGAT CCACTGGCTG 
GCGCCGCTGG GCATCGAGGT GGCGTGGCTG ACCGGCAGCC GCAAGGGCAA GGGCCGCGCC 
GCGATGCTGG AGAAGGTGGC CAGCGGCGCC GCGCAGCTGG TGGTCGGCAC GCACGCGGTG 
ATCCAGGACG ACGTGCATTT CGCCCGCCTC GGCCTGGCGG TGATCGACGA GCAGCACCGC 
TTCGGCGTGG CGCAGCGGCT CGACCTGCGC CGCAAGCTGG CGCTGCAGTC GCTCGAACCC 
CACCTCCTCA TGATGAGCGC CACGCCGATC CCGCGCACGC TGGCGATGAC CTACTTCGCC 
GACCTCGACG TGTCCACCAT CGACGAGCTG CCGCCCGGGC GCACGCCGAT CGTCACCCGG 
GTGTTTGCGG CCGACCGGCG CGAGCAGGTG ATCGCGCGGG TGCGCGACGA GGTCGCCAAG 
GGCAGCCAGG TCTATTGGGT GGTGCCGTTG ATCGAGGAGA GCGAGGCGCT CGACCTGCAG 
AACGCCACCG AGACCCACCA GCAGCTCGGC GCCGTGCTGC CCGGCACGCA GGTCGGCCTG 
CTGCACGGGC GTATGCCGCC GGCCGAGAAG GCCTCGGTGA TGGCGCTGTT CTCGGGCGGC 
CAGATGAGCG TGCTGGTCGC CACCACCGTG ATCGAGGTCG GTGTCGATGT GCCCAACGCC 
AGCGTGATGG TGATCGAGCA CGCCGAGCGT TTCGGCCTGG CGCAGCTGCA CCAGCTGCGC 
GGGCGGGTCG GGCGCGGTTC GGTGGCCAGC GTGTGCGTGC TGCTCTACAC CGGGCCGCTG 
TCGCAGACCG GCCGCGATCG CCTGAAGGCG ATGGCCGAGA CCACCGACGG CTTCGAGATC 
GCCCGCCGCG ACCTCGAGAT CCGCGGCCCC GGCGAGTTCA TGGGCGCGCG CCAGAGCGGC 
GACGCGCTGC TGCGGTTTGC CGATCTGGCG CAGGACGGCG AACTGCTGCA GTGCGCCCGC 
GAGATCGCGC CACGCCTGCT CGATCGGCAC CCGGCTGCGG CGCAGGCGCA GATCCGGCGC 
TGGCTGGGCG GCAAGCTCGA ATACCTGAAG GCCTGA 

 

Protein sequence

MDKLGLERDI DLALHLPLRY EDETRLTPLA AAREGDLLHV EGVVREARIE LRPRRQFIVK 
LVEALGDAPG RIELILRFVN FYPSHQKTFA PGTRLRVRGE LRGGFFGREI VHPVFKTVEP 
GAPLARELTP VYPTSAQLPQ AYLRKAVAAG LSRARLDEIL PPDLLPAGLP PLRESLYLLH 
HPPADISLHA IQEREHPAWQ RIKFEELLAQ QLSQLQAQRE RAKLRAPMLR GSAGGLHEKL 
LAALPFQLTG AQRRVAEEIA TDLGRPQPMN RLLQGDVGSG KTVVAALAAA VAMDAGWQCA 
LMAPTEILAE QHFRKLIHWL APLGIEVAWL TGSRKGKGRA AMLEKVASGA AQLVVGTHAV 
IQDDVHFARL GLAVIDEQHR FGVAQRLDLR RKLALQSLEP HLLMMSATPI PRTLAMTYFA 
DLDVSTIDEL PPGRTPIVTR VFAADRREQV IARVRDEVAK GSQVYWVVPL IEESEALDLQ 
NATETHQQLG AVLPGTQVGL LHGRMPPAEK ASVMALFSGG QMSVLVATTV IEVGVDVPNA 
SVMVIEHAER FGLAQLHQLR GRVGRGSVAS VCVLLYTGPL SQTGRDRLKA MAETTDGFEI 
ARRDLEIRGP GEFMGARQSG DALLRFADLA QDGELLQCAR EIAPRLLDRH PAAAQAQIRR 
WLGGKLEYLK A