Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1567 |
Symbol | tgt |
ID | 6163379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1665771 |
End bp | 1666943 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664321 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_001790599 |
Protein GI | 171058250 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.841551 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAATT TCGACCTCCT CACCACCGAG GGCCACGCCC GCCGCGGCCG CCTCACGCTC AACCACGGCG TCGTCGAGAC GCCGATCTTC ATGCCCGTGG GCACCTACGG CACCGTCAAG GGCGTGATGC CGCGCGACCT GGAGACCATG GGCGCGCAGA TCATCCTGGG CAACACCTTC CACCTCTGGA TGCGCCCGGG GCAGGACGTG ATGGCGCAGT TCGGCGGCCT GCACCGCTTC GAGAACTGGA CCCGGCCGAT CCTGACCGAC AGCGGCGGCT TCCAGGTCTG GAGCCTGGGC GAGATGCGCA AGATCAGCGA GGAAGGCGTC AGGTTCGCCT CGCCGGTCAA CGGCGACAAG CTGTTCCTGA CGCCCGAGGT CAGCATGCAG ATCCAGACCG TGCTCAACAG CGACATCGTC ATGCAGTTCG ACGAATGCAC GCCGTACTGG CAAGGCGCCA AGAACGTCGG CCACATCACG ACCGAAAAGG AAGCGCGCGT CTCGATGGAG CTGAGCCTGC GCTGGGCCGC TCGCTCCAAG GCCGAGTTCG CGCGGCTGGG CAATCCGAAC GCGCTGTTCG GCATCGTGCA GGGCGGCATG TTCGAGAGCC TGCGCGAGGA GTCGCTCAAC GCGCTGGTCG AGCTCGACTT CCCCGGCTAC GCGGTCGGCG GCGTCAGCGT CGGCGAGCCC AAGGACGAGA TGCTGCGCAT CATGAATCAC ACGCCCCACT TGCTACCCGC CGACAAGCCG CGTTACCTGA TGGGCGTGGG CACGCCCGAG GACCTGGTCG ACGGCGTGGC CTGCGGCGTC GACATGTTCG ACTGCGTGAT GCCCACCCGC AACGCCCGCA ACGGCCACCT GTTCACCCGC TACGGCGACC TGAAGATCCG CAACGCCCGC CACAAGGCCG ACGAGCGCCC GCTCGACGAG ACCTGCAGCT GCCAGGCCTG CAAGGGCAGC ACGCTGCCGG ATGGCCGTGT CACCGGTGGC TTCAGCCGCG CCTACCTGCA CCACCTGGAT CGCTGCGGCG AGATGCTCGG GCCCATGCTG GCCAGCATCC ACAACCTGCA CTACTACCTG AACCTGATGC GCGAGGTGCG CGAGGCGCTC GACGCGGGGC GCTTCGAGGC GTTTCGGGCG CAGTTCAAGG CGGATCGGGC GCGCGGCGTT TGA
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Protein sequence | MLNFDLLTTE GHARRGRLTL NHGVVETPIF MPVGTYGTVK GVMPRDLETM GAQIILGNTF HLWMRPGQDV MAQFGGLHRF ENWTRPILTD SGGFQVWSLG EMRKISEEGV RFASPVNGDK LFLTPEVSMQ IQTVLNSDIV MQFDECTPYW QGAKNVGHIT TEKEARVSME LSLRWAARSK AEFARLGNPN ALFGIVQGGM FESLREESLN ALVELDFPGY AVGGVSVGEP KDEMLRIMNH TPHLLPADKP RYLMGVGTPE DLVDGVACGV DMFDCVMPTR NARNGHLFTR YGDLKIRNAR HKADERPLDE TCSCQACKGS TLPDGRVTGG FSRAYLHHLD RCGEMLGPML ASIHNLHYYL NLMREVREAL DAGRFEAFRA QFKADRARGV
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