Gene Lcho_1541 details

Gene Information

• Locus tag: Lcho_1541
• ID: 6161300
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1633530
• End bp: 1635500
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641664296
• Product: cytochrome c family protein
• Protein accession: YP_001790574
• Protein GI: 171058225

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.0115719
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGCTGCGCC TGTGCGCCGT GCTGCTGCTG GCCGCGCTGG CCTGGGGCCT GCCGACCCCC 
GCGTCGGCGC AGGGCATCGA GTCGGTGCTC GCCCCCGGCA AGCTGATCAC CGGCCATGCC 
AAGGCCGAGG CCGACTGCAA GAGCTGCCAC GTCAAGTTCG ACCGTGCCGC GCAGGACGGC 
CTGTGCACCG AGTGCCACAA GGACGTCGGT GCCGACCTGC GCCAGCGCGC CGGTTTCCAT 
GGCCGCAAGC TGGCCGAGCA GCCGCAGGCC TGCCGCACGT GTCACACCGA CCACAAGGGC 
CGCAACGCCA AGATCGTCGA GCTCGATCAG AAGGCCTTTG ATCACGACAA GCTGTCGGAC 
TTCGCCCTGC GCGGCAAGCA CGTCACGACC GAATGCAAGA GCTGCCACGT GGCCGGCAAG 
AAGTGGCGCG AGGCGGCACT CGAGTGCAAC AGCTGCCACA AGAAGGACGA CGTGCACAAG 
GCCGCGCTGG GCCCCAAGTG CGAGAGCTGC CACGGTGAAT CCGACTGGAA GAAGACCACC 
TTCGACCACG CCAAGACCCG CTTCGCGCTC GACTTCAAGC ATGCCGACGC CTCGTGCAGC 
GATTGCCACA AGGATCAGCG CTATCAAGAT GCGCCGCGCA CCTGCATCGG CTGCCACAAG 
AAGGACGACG AACAGCTGAT CAAGGGCCGC CGCGGCCACC AGGGCCAGTA CGGCACCAAG 
TGCGAGAGCT GCCACAACGC GAAGGGCTGG AAACCCAGCA CCTTCAACCA CGACGCCGAC 
ACCAAGTACG CGCTCAAGGG CCTGCACAAA CCGCTCGAAT GCAAGACCTG CCACACCGGC 
CCGCTCTACA AGCAGAAGCT CGCCAGCGAC TGCCTGAGCT GCCACAAGAA GGACGACAAG 
CACAAGGGCA GCCTGGGCCA GAACTGCAGC TCGTGCCACA ACGAACGCGG CTGGAAGGAA 
CTCGGCAAGT TCGACCACGA CAAGACGAAA TTCCCGCTGC TGGGCAAGCA CGTCGACACC 
GAGTGCAAGG CCTGCCACAA GTCGCTGGTC TACAACGAGG CGCCCAAGGA CTGCATCGGC 
TGCCACAAGA AGGACGACAA GCACGAGGGC ACGCTCGGCC GCGCCTGCGA AAGCTGCCAC 
GGCGCGAGCG ACTGGAAGAC CACCAAGGGC CGCTTCGATC ACGACAAGAC CAAGTTCCAG 
TTGCGCAACG GCCATGCCGG CCCGAAGGTC GAATGCAAGG CCTGCCATGT CAACCTCAAG 
AGCTACCGCA ACACGCCGAC CGACTGCTAC AGCTGCCACA AGAAGGACGA CAAGCACGAA 
GGCCAGCAGG GCCAGCGCTG CGAGAGCTGC CACATCGACA AGAACTGGAA GACGCTGGTC 
GGCTTCGACC ACGCCAAGAG CCGCTTCGCG CTGACCGGCC GCCACGTCGT GACCGCCTGC 
AAGGACTGCC ACACCAGCGC GCGCTTCAAG GACGCGCCGA GCGACTGCTA CAGCTGCCAC 
AAGAAGGCCG ACAAGCACAA GCTGACGCTG GGCGTGTCGT GCGAGAGCTG CCACAACACC 
CGCGACTGGG CGCTGTGGAA TTTCAATCAC GACAAGCAGA CCGACTACCG CCTCGAAGGC 
CCGCACCGCA AGCTGGCGTG CACCTCGTGC CACACGCGGG AAGCGCCACG TGGCAAGGCC 
ACCGCGCCGG TCGGCCAGGC CTGCATCGGC TGTCACCGCA AGGACGACGT GCACGACGGC 
AGCTTCGGCA GCCGCTGCGA ACAGTGCCAT GTGGTCGATC GCTGGAAGCG CGTGATCAAC 
CGTGGCATGC GCGGCAGCGT CGACGACCGG CTCGATCCGG GCGCGGCGCG CGGCCTGGCC 
GGTGTGGCTG AAGTGGCCGA AACCCTTGGC CAGGCCAGCC ACGCCGCACG ACGTTTTCTC 
AATCCCCCAC CCAGCGCGGC CATGAACGGC CGTGAAAGGA ATCCGACATG A 

 

Protein sequence

MLRLCAVLLL AALAWGLPTP ASAQGIESVL APGKLITGHA KAEADCKSCH VKFDRAAQDG 
LCTECHKDVG ADLRQRAGFH GRKLAEQPQA CRTCHTDHKG RNAKIVELDQ KAFDHDKLSD 
FALRGKHVTT ECKSCHVAGK KWREAALECN SCHKKDDVHK AALGPKCESC HGESDWKKTT 
FDHAKTRFAL DFKHADASCS DCHKDQRYQD APRTCIGCHK KDDEQLIKGR RGHQGQYGTK 
CESCHNAKGW KPSTFNHDAD TKYALKGLHK PLECKTCHTG PLYKQKLASD CLSCHKKDDK 
HKGSLGQNCS SCHNERGWKE LGKFDHDKTK FPLLGKHVDT ECKACHKSLV YNEAPKDCIG 
CHKKDDKHEG TLGRACESCH GASDWKTTKG RFDHDKTKFQ LRNGHAGPKV ECKACHVNLK 
SYRNTPTDCY SCHKKDDKHE GQQGQRCESC HIDKNWKTLV GFDHAKSRFA LTGRHVVTAC 
KDCHTSARFK DAPSDCYSCH KKADKHKLTL GVSCESCHNT RDWALWNFNH DKQTDYRLEG 
PHRKLACTSC HTREAPRGKA TAPVGQACIG CHRKDDVHDG SFGSRCEQCH VVDRWKRVIN 
RGMRGSVDDR LDPGAARGLA GVAEVAETLG QASHAARRFL NPPPSAAMNG RERNPT