Gene Lcho_1539 details

Gene Information

• Locus tag: Lcho_1539
• ID: 6161298
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1630110
• End bp: 1632155
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 641664294
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_001790572
• Protein GI: 171058223
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 0.0594257
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCAGAC CTCGGCCGGC TTGGGTCGCA CGCTTGCGCA GCTGGGCCGG TTCGCTGAAG 
TTGCGGCTGG CGCTGGCCAG CGGCGTGATC ATCGCCCTGA GCGTGGTCGT GGTGTCGAGC 
CTGATGCTCG AACGCGGTGG CCGCCACACC GAGCAGGCCA TCCTCGACAG CGAAGCGGCC 
AATGCCGAGC ACCTGGCCAC CGTGCTGCGC CAGCGCATCG TGCTGCTGCA GGTCGCATTG 
CGGGCGGCGG CGGCACCGGT CGACGCCACC ATCCTCACCG ATCCGGCCGC CCAGGTGCGC 
TACATGCAGC AGCGCCAGGT GCTGGCCACG CTGTTCGCCA ACATCGCGCT GGTGTCGGCA 
GACGGCCGCG TGCTGGCCGT GCGCGACGGT TCGGGCATTC GCCAGGACGG CCTCTCGGTG 
GCCGATCGCC CCTACTTCCG GCAGACCGTG CAGCTGGGCC GGCCGATCGT CTCCGAGCCG 
ATGATCGGGC GGCTGTCGCG CGAGCCCGTC GTCGTGCTGA CGATGCCGGT CGCGTCGGTC 
GGCCCGACCG GCGGTGCCGT TCTGCTCGGC ACGCTGCGCC TGAGTTCCCA TGACCTGCTG 
GCCGATCTGG CCGCCACCGG CTCCGATGGC CGCACGGTGG TGCAGACGGT CGTCGCCGAT 
GCGTCGGGCC TGATCCTGGC GCACCCCGAC CCCGCGATGG TGATGCGGCC GGTCGAATCG 
GTGCCCGGCC TGCAGTCGAC GGTGGCGCAG TGGGTGCGAT CGGGTCGGCC GATCGAGCCG 
CTGCCCGACG CCGTCAACGA GGCCGGCTAC GTGGTGGCCA AGGCCGGTGT GGCGGGGGCC 
GACTGGATGG TGTTCCGGGT GGTGTCGAGC GAGGCGCTGC TGGGCGGCTT CCAGCTCGCC 
GTGCGCGAGG CCCTCGGCTA CGCCGCCGGC GTGGCGCTGC TGGCGACGGG CCTGCTGTGG 
TGGTGGCTGG TGCGGCTGCT GCGTCCGCTC GACCGCCTCG AAGAGCGCGC CCGTGCCCTC 
GGCCCCGACG GCCTGCCGCT CGAGGAGGGC TGGCCCGATG CGCCCGGCGA GGTCGGCGAA 
CTCGAGCTCG CGCTGCGCGA TTCGCTGCGT GCGCAGGCCC GTGTCGAAGC CAGCAACGCC 
TCGCTGCTCG ACAAGCTGCG CTCGGTGATG AGCACCGCGC CGATGGGACT GGCCTTCACG 
CGGGCGCGCC ATTTCGAGGT GGTCAGCGAC GAGTGGTGCC GCCTGCTCGG TTATCCCGTC 
GGGGCGCTGG TGGGCGAGCC GGCACGGCTG ATCTATGCCT CCGAGGCCGA TTACGAACAG 
GTCGGCCCGG ATGTGGCCGA TGCCTTCGCC GCGGGTCGGC CGTTTGTCGG CGACTTCGAA 
TTCCTGCGCC GCGACGGCGG TCGTTTCATC GGCGAACTGC ACGGCCGTCC GGTCAACGTG 
AGCGATGCGG CAGCCGGCAC GATCTGGCTG CTGCGCGACG TCACCGACGA GCGCGAAGCC 
CATCGCGAAC TGGCCTGGAC CGCCAACCAC GACGCCCTGA CCGGGCTGGT CAACCGGCGC 
CACTTCGAGC ATGAACTGGC GCGCCTGCTC GCCCACATGC AGCCGGGCAT GACGGCGGCG 
GCGCTGTTCA TCGACCTGGA CCGCTTCAAG CAGGTCAACG ACAGCGCCGG CCACGCCGCC 
GGCGACCAGG TCCTGCGCGA GGTGGCGCAG GCGCTCGCAG CCAGCGTGCG GCGCGACGAA 
CTGGTGGCGC GACTGGGTGG CGACGAGTTC GCGATCGTGC TCGGTGCCTG CGACCTGGCC 
GCGGCCGAAC GCATCGCGCA CAAGGTGCGT CTGGCGGTCG AGCAGGTGAT CGTGCGCTGG 
GGCGAACACG AGCTGAGCGT GGGTGCGAGT GTCGGCGTGG TGGAGATCCC GGCCGGCGGC 
GTCGACGTGG CCGGCGTGCT CAATGGCGCC GATCTGGCCT GCTACGAGGC CAAGCAGGCC 
GGCCGCAACG CCGTGCGTAC CGGCAGTCTG CCGTCCTTGC GGCTGGTCAC CAGCCGTCCC 
GGATGA 

 

Protein sequence

MIRPRPAWVA RLRSWAGSLK LRLALASGVI IALSVVVVSS LMLERGGRHT EQAILDSEAA 
NAEHLATVLR QRIVLLQVAL RAAAAPVDAT ILTDPAAQVR YMQQRQVLAT LFANIALVSA 
DGRVLAVRDG SGIRQDGLSV ADRPYFRQTV QLGRPIVSEP MIGRLSREPV VVLTMPVASV 
GPTGGAVLLG TLRLSSHDLL ADLAATGSDG RTVVQTVVAD ASGLILAHPD PAMVMRPVES 
VPGLQSTVAQ WVRSGRPIEP LPDAVNEAGY VVAKAGVAGA DWMVFRVVSS EALLGGFQLA 
VREALGYAAG VALLATGLLW WWLVRLLRPL DRLEERARAL GPDGLPLEEG WPDAPGEVGE 
LELALRDSLR AQARVEASNA SLLDKLRSVM STAPMGLAFT RARHFEVVSD EWCRLLGYPV 
GALVGEPARL IYASEADYEQ VGPDVADAFA AGRPFVGDFE FLRRDGGRFI GELHGRPVNV 
SDAAAGTIWL LRDVTDEREA HRELAWTANH DALTGLVNRR HFEHELARLL AHMQPGMTAA 
ALFIDLDRFK QVNDSAGHAA GDQVLREVAQ ALAASVRRDE LVARLGGDEF AIVLGACDLA 
AAERIAHKVR LAVEQVIVRW GEHELSVGAS VGVVEIPAGG VDVAGVLNGA DLACYEAKQA 
GRNAVRTGSL PSLRLVTSRP G