| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1533 |
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| Symbol | |
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| ID | 6161685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1623946 |
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| End bp | 1626198 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664288 |
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| Product | CheA signal transduction histidine kinase |
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| Protein accession | YP_001790566 |
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| Protein GI | 171058217 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.037058 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACG ACGACATCCT GGCCGCAGCA CGCGAGGGCT TCCTCGAAGA AGCCGACCAG
CTGCTGCAGC AGTTCGAGGA ATCGCTGCTC GGGCTCGAAT CCGATCCGCA GGACTTCGAG
CTGCTCAACG CCGCCTTCCG CGCCGCCCAC ACCATCAAGG GCACCGCAGG CCTGTTCGGC
TGCGACGCGG TGGTCGGCTT CACGCACGAG GTCGAGACCC TGATGGAGGC GCTGCGCAGC
GGCGAACTGG CCGTCAGCGA AGCGATCTTC GCTGCCCTGC TGCAGGCCCG CGACCAGATG
GGCCGCCTGC TCGAGGAAGT GCGCGCCGAT CGGGGCACCC TCGAACTGTG CGACGCCGAC
GTGCAGGCCA TGAGCCAGCG CCAGGCCGAC GAACTGCGCG CCCTGATGGG CCTGGCGCCG
CTGGGCGCGG CCACGCATGA CGGCGCGCCG GACACCCCCG TCGCCCCGGC CGCCGGCGCC
GGGCTCTGGC ACCTGTCGCT GCGCTTCGGC GGCGACGCGC TGCGCAACGG CCTCGACCCG
CTGTCGTTCA TCCGCTACCT CGACACCGTC GGTACGGTCG CCGCGATCGA CACGGTCTGC
GACAGCCTGC CCGAACTGGC CGAGCTCGAC CCCGAGCACT GCCACCTCGG CTTCGAGATC
CGACTGGCCA GCTCGGCCGA CCGGCAGGCC ATCGAACAGG TCTTCGAGTT CGTGCTCGAC
GACTGCTCGC TGCAGCTGCT CGCCCCCGAC GCCAGTGCCG CAGACTACGA CCGCCTGCTC
GACCAGCGCA GCGGCGGCGA TGCCGACGCA CGCGAGGCGC TGCTGCAGCG GTGGCTGGCC
CAGGGCGTGC CGCTGGCGCT GCGTCCGGCG GTGCCTGCCG CTGCGGCAAA CGCCCTGCCG
CCGACCGGAT CGAACCCGGC CGCCGACACG CCCGACCTGC CACCCGAGAG CGCCCCGGTG
GTGGCGATCG AGCGCCGCGA CGGCGAGCGC GAGCGGCGCA AGGAAAGCGA ACGGCGCGCC
GGCGCCAAGG ACCGGCGCGG CGACGACACC CGCTTCCTGC GGGTCAGCGC CGACAAGCTC
GACCACCTGA TCGACCTGAT CGGCGAGCTG GTGATCGCCG GCTCGGGTGC CGAGCTGGTG
GCCCAGCGCG AACAGTCACC GGCCTTCATG GAAGCCGCGC TGCGCATCCA CGACCTGGTG
CAGGAGGCAC GCGACGGCGC GCTCGGCCTG CGCATGGTGC CGATCGGCGA GACCTTCGCG
CGCTTCCAGC GCGTGGTGCG CGACGTCAGC AAGGCGCTGG GCAAGGACGT CGAACTCGAG
ATCACCGGCG GCGACACCGA GATGGACAAG TCGATGGTCG AGGCCATCGC CGACCCGCTG
ATGCACCTGG TGCGCAACAG CCTCGACCAC GGCATCGAAG GCGGCGACGA GCGCGCCGCC
AGCGGCAAGA ACCCGCGCGG CAAGCTCGCG CTCAACGCCT ATCACGAGAG CGGCCAGATC
GTCATCGAGG TCAGCGACGA CGGCCGCGGC CTGGCGCGCG AGCGCATCCT GGCCAAGGCG
ATCGAACGCG GGCTGATCGA CGGCGACACC GTGCTCACCG ACGCCGAGGT CAACCTGCTG
ATCTTCGCGC CGGGTTTCTC GACCGCCGAG AAGGTGACCG ACATCTCCGG GCGCGGTGTC
GGCATGGACG TGGTCAAGCG CAACATCGAC GCACTGCGCG GCCACATCCA GATCGCCAGC
ACCGTGGGCC GCGGCACCAC GATGCAGATC CGCCTGCCGC TGACGCTGGC GATCATCGAC
GGCTTCCTGA CCAGCATCGG CGACGTGCAT TACGTCGTGC CGCTGGAGGG CGTGGTCGAG
TGCATCGAGA CCCCGCCGGC CTGCCGTGCC GGTGCGAGCG GTGGCGTCGG CCCACGCCTG
TCGGGCTGCT TCGACCTGCG CGGCGAGGTG CTGCCCTACG TCGACCTGCG CACCTGCTTC
CAGCTCAGGA GCGCGCCGCC GGCACGCCAG AGCATGCTGC TGGTGCGCAC CGCCACCAGC
AAGGTCGGCC TGCTGGTCGA CCGCCTGCTG GGCGAACACC AGACCGTGCT CAAGCCGCTG
GGGCGGGTGT TCCAGCAGCT GCCGGGCATC GCCGGCTCGA CCATCCTGGG CAGCGGCGAA
GTGGCGCTGG TGCTCGACAT CCCGAGCCTG ATGAGCCACG TGACGCCGCC CGTGCAGCGT
GGCGGCGCCC ACCATCCCCA GACGACCCAC TGA
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| Protein sequence | MTDDDILAAA REGFLEEADQ LLQQFEESLL GLESDPQDFE LLNAAFRAAH TIKGTAGLFG
CDAVVGFTHE VETLMEALRS GELAVSEAIF AALLQARDQM GRLLEEVRAD RGTLELCDAD
VQAMSQRQAD ELRALMGLAP LGAATHDGAP DTPVAPAAGA GLWHLSLRFG GDALRNGLDP
LSFIRYLDTV GTVAAIDTVC DSLPELAELD PEHCHLGFEI RLASSADRQA IEQVFEFVLD
DCSLQLLAPD ASAADYDRLL DQRSGGDADA REALLQRWLA QGVPLALRPA VPAAAANALP
PTGSNPAADT PDLPPESAPV VAIERRDGER ERRKESERRA GAKDRRGDDT RFLRVSADKL
DHLIDLIGEL VIAGSGAELV AQREQSPAFM EAALRIHDLV QEARDGALGL RMVPIGETFA
RFQRVVRDVS KALGKDVELE ITGGDTEMDK SMVEAIADPL MHLVRNSLDH GIEGGDERAA
SGKNPRGKLA LNAYHESGQI VIEVSDDGRG LARERILAKA IERGLIDGDT VLTDAEVNLL
IFAPGFSTAE KVTDISGRGV GMDVVKRNID ALRGHIQIAS TVGRGTTMQI RLPLTLAIID
GFLTSIGDVH YVVPLEGVVE CIETPPACRA GASGGVGPRL SGCFDLRGEV LPYVDLRTCF
QLRSAPPARQ SMLLVRTATS KVGLLVDRLL GEHQTVLKPL GRVFQQLPGI AGSTILGSGE
VALVLDIPSL MSHVTPPVQR GGAHHPQTTH
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