Gene Lcho_1523 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1523 
Symbol 
ID6161568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1609896 
End bp1610369 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content66% 
IMG OID641664278 
Productsignal-transduction protein 
Protein accessionYP_001790556 
Protein GI171058207 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0526572 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGTCA GCGACATTCT GCGAGTCAAG GGCAGCACCC TGTTCACCGT GCAGCCTCAA 
GAGGCCCTTG CCGTGGCTGT GCAGACCATG AGCGACAACG ACATCGGCTC GCTCGTGGTG 
ATGCACCACG GCGACCTGGT GGGCATGCTC ACCTTCCGCG AGGTCATCGC CGCGGTGGTC 
AAGAACGGCG GCACCGTCGG CCAGAGCACC GTGCGCGGCG TGATGGACGA TCACCCGCTG 
ACCTGCACCC CCGCCACCGA GATCGACGAG GTGCGCCGCA TGATGCTCGA GCGCCATGCC 
CGCTACATGC CGGTGGTCGA CGGGCGAACG CTGATGGGCG TGATCTCGTT CTACGACGTC 
GCCAAGGCGG TGGTCGACAG CCAGGACTTC GAGAACCGGA TGCTCAAGGC CTACATCCGC 
GACTGGCCGG TCGAGGCCGA CGAGGGCGCC GAAGAGGTCA AGCCGGCCGC CTGA
 
Protein sequence
MKVSDILRVK GSTLFTVQPQ EALAVAVQTM SDNDIGSLVV MHHGDLVGML TFREVIAAVV 
KNGGTVGQST VRGVMDDHPL TCTPATEIDE VRRMMLERHA RYMPVVDGRT LMGVISFYDV 
AKAVVDSQDF ENRMLKAYIR DWPVEADEGA EEVKPAA