Gene Lcho_1521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1521 
Symbol 
ID6161566 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1607599 
End bp1608462 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content73% 
IMG OID641664276 
Productalpha/beta hydrolase fold 
Protein accessionYP_001790554 
Protein GI171058205 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0919196 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATCG ACCACCCGAA CGGCGGCAGC GTCTACGCCT ACACCGGCGG CCGAGCCTGG 
GAGACCAGCG CGGCCGACGC CCGGCCCTGC GTCGTGATGC TGCACGGCGC GCTCAACGAC
CACAGCGTCT GGACCCTGCC GGCGCGCTGG CTGGCCCATC ACGGCCGGGA CGTGCTGGTG
CCCGATCTGC CCGGCCACGG CCGCAGCGGC GGCCCGGTGC TGCCGGACGT CGGCGCGCTG
GCCGACTGGC TGCTCGCGCT GCTCGATCGA CTGGGGCGGC GCCGCGTCGC GCTGATCGGC
CACAGCATGG GCTCGCTGAT CGCGCTGGAA GCGGCGTCAC GGGCCGTCGG CTCGGCCTTG
GACGTCAGTC ATCTGGTGCT GGTCGGCACG GCGGTGCCGA TGCCGGTGTC GGCCGCGCTG
CTGGCCACGG CGGCACAACA GCCGCTGCAG GCGATCGAGA TGGTGGTGAG CTTTGCCCAC
AGCAGCCTGG GCGCCAAACC CGGCAATCCC GGCCCGGGCA CCTGGCACCA CGGCGCAAGC
CGCCAGCTGA TGCGCCAGGT GCTGGCGCGC TCGATGGCGG CGGGCGAATC GGCGGGCGTC
GAGCACAACC TGTTCCACCA CGATTTCGGC ATCTGCAACG CCTACCAGGA CGGGATGGCC
GCGGCCGCGC GAGTGGCCGC AGCCGGTGCC ACGCGCTGCA GCGTGGTGGT GGGCGAGCGT
GACCGGATGA CCGCGCCGCG CGCAGCGCAA GACGTCACGG CCGCGTTGGC GGCGCAGCGC
CTGGGCCTGC CCAAGGCCGG CCACGACCTG ATGCAGGAAG ACCCCGAAGG CCTGCTGCAG
GCCTTGCGGC GCGCGCTGAT CTGA
 
Protein sequence
MLIDHPNGGS VYAYTGGRAW ETSAADARPC VVMLHGALND HSVWTLPARW LAHHGRDVLV 
PDLPGHGRSG GPVLPDVGAL ADWLLALLDR LGRRRVALIG HSMGSLIALE AASRAVGSAL
DVSHLVLVGT AVPMPVSAAL LATAAQQPLQ AIEMVVSFAH SSLGAKPGNP GPGTWHHGAS
RQLMRQVLAR SMAAGESAGV EHNLFHHDFG ICNAYQDGMA AAARVAAAGA TRCSVVVGER
DRMTAPRAAQ DVTAALAAQR LGLPKAGHDL MQEDPEGLLQ ALRRALI