Gene Lcho_1519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1519 
Symbol 
ID6161564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1604515 
End bp1605789 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content70% 
IMG OID641664274 
Productribonuclease BN 
Protein accessionYP_001790552 
Protein GI171058203 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.105357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGCCA GCATGAATGG TTCCCCCCGC CACACCGGCC GATCCCGTTT TCGCCTGATG 
CGCCAGAGCC TGTCCCACGC CTGGCGCGAA CTCCAGCACT GGCCCTGGCT CGACACGCTG
CGCACGCTGC GGCTGCGTTT TCGCGAAGAC CGCCTCGGCG TCACCGCCAG CAGCCTGACC
TTCACCACCA CCATCGCGAT GGTGCCGATG GCCACGGTGA TGTTCGCGGT CTTCACCGCC
TTCCCGATGT TCGGCACCTT CCGCAAGGCG CTCGAGACCT ACCTGATCCA GAACCTGGTG
CCTGACCAGA TCGCCAAGCC GGTGCTGCTG CAGCTGAGCC AGTTCGCGCT CAAGGCCAAC
CGGGTCGGCG CGGTCGGCCT GGTGCTGCTG GGCATCACGG CGATCGCGCT GCTGCTGACC
ATCGACCGCG CGCTCAACGC GATCTGGCGG GTGCGCCAGC CGCGCCCGAT CGCGCAGCGC
GTGCTGGTGT ACTGGGCCAT CGCCACGCTC GGCCCGCTGC TGCTGGGCGT GAGCCTGTCG
ATCACGTCCT ACGCGCTGTC GGCCTCGAAA GGGTTCGTCA GCGCGCTGCC GGGTGGTGTG
TCGCTGATGC TCGACCTCAC CGAGCTGGCG CTGATGGCGG CCGGCATGGC GGCGCTGTTC
CGCTTCGTGC CCAACACGCC GGTGCGCTGG GTGCACGCGA TATCCGGCGG CGTGTTCGTC
GCCATCGGCT TCGACCTGGC CAAGCGCGCG CTCGCCTGGT ACCTGGGCCT GGCGCCGACC
TACACCACCA TCTACGGCGC GTTCGCCACG GTGCCGATCC TGCTGATCTG GATCTACCTC
GGCTGGGTCA TCGTGCTGCT GGGTGCGGTG ATCGCCGCCT ACGCGCCGAG CCTGCAGATG
CGGGTGGTGC GCCACGCCCC GACGCCCGGC TGGCGCTTCA CGCTGGCGCT GACGCTGCTC
GGCGAGCTGG CGCGCGCGCA GGGCAGCGAG CGGCGCGGCG TGTCGGCGGC CGAGCTGGCC
GAGACGCTGC GGCTCGATCC GCTGCAGATC GAGCCGGTGC TCGAACAGCT GCTCGCGCTC
GACTGGATCG GTCGCCTCGA AGAACCCGGC GATCCGCGCC TGGTGCTGCT GGTCGATCCG
GCCACCACCG TCGTGCAGCC GCTGGCCGGG CGCCTGCTGC TGGCGCCGCT GCTGTCCAAC
CAGGCCTTTG CACAGGCCAG CGGCTGGCAG GACACCCGTC TGGCGGACAT CCTGCCGCCG
ATGCGCCCAG CCTGA
 
Protein sequence
MIASMNGSPR HTGRSRFRLM RQSLSHAWRE LQHWPWLDTL RTLRLRFRED RLGVTASSLT 
FTTTIAMVPM ATVMFAVFTA FPMFGTFRKA LETYLIQNLV PDQIAKPVLL QLSQFALKAN
RVGAVGLVLL GITAIALLLT IDRALNAIWR VRQPRPIAQR VLVYWAIATL GPLLLGVSLS
ITSYALSASK GFVSALPGGV SLMLDLTELA LMAAGMAALF RFVPNTPVRW VHAISGGVFV
AIGFDLAKRA LAWYLGLAPT YTTIYGAFAT VPILLIWIYL GWVIVLLGAV IAAYAPSLQM
RVVRHAPTPG WRFTLALTLL GELARAQGSE RRGVSAAELA ETLRLDPLQI EPVLEQLLAL
DWIGRLEEPG DPRLVLLVDP ATTVVQPLAG RLLLAPLLSN QAFAQASGWQ DTRLADILPP
MRPA