Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1519 |
Symbol | |
ID | 6161564 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1604515 |
End bp | 1605789 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664274 |
Product | ribonuclease BN |
Protein accession | YP_001790552 |
Protein GI | 171058203 |
COG category | [S] Function unknown |
COG ID | [COG1295] Predicted membrane protein |
TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.105357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATAGCCA GCATGAATGG TTCCCCCCGC CACACCGGCC GATCCCGTTT TCGCCTGATG CGCCAGAGCC TGTCCCACGC CTGGCGCGAA CTCCAGCACT GGCCCTGGCT CGACACGCTG CGCACGCTGC GGCTGCGTTT TCGCGAAGAC CGCCTCGGCG TCACCGCCAG CAGCCTGACC TTCACCACCA CCATCGCGAT GGTGCCGATG GCCACGGTGA TGTTCGCGGT CTTCACCGCC TTCCCGATGT TCGGCACCTT CCGCAAGGCG CTCGAGACCT ACCTGATCCA GAACCTGGTG CCTGACCAGA TCGCCAAGCC GGTGCTGCTG CAGCTGAGCC AGTTCGCGCT CAAGGCCAAC CGGGTCGGCG CGGTCGGCCT GGTGCTGCTG GGCATCACGG CGATCGCGCT GCTGCTGACC ATCGACCGCG CGCTCAACGC GATCTGGCGG GTGCGCCAGC CGCGCCCGAT CGCGCAGCGC GTGCTGGTGT ACTGGGCCAT CGCCACGCTC GGCCCGCTGC TGCTGGGCGT GAGCCTGTCG ATCACGTCCT ACGCGCTGTC GGCCTCGAAA GGGTTCGTCA GCGCGCTGCC GGGTGGTGTG TCGCTGATGC TCGACCTCAC CGAGCTGGCG CTGATGGCGG CCGGCATGGC GGCGCTGTTC CGCTTCGTGC CCAACACGCC GGTGCGCTGG GTGCACGCGA TATCCGGCGG CGTGTTCGTC GCCATCGGCT TCGACCTGGC CAAGCGCGCG CTCGCCTGGT ACCTGGGCCT GGCGCCGACC TACACCACCA TCTACGGCGC GTTCGCCACG GTGCCGATCC TGCTGATCTG GATCTACCTC GGCTGGGTCA TCGTGCTGCT GGGTGCGGTG ATCGCCGCCT ACGCGCCGAG CCTGCAGATG CGGGTGGTGC GCCACGCCCC GACGCCCGGC TGGCGCTTCA CGCTGGCGCT GACGCTGCTC GGCGAGCTGG CGCGCGCGCA GGGCAGCGAG CGGCGCGGCG TGTCGGCGGC CGAGCTGGCC GAGACGCTGC GGCTCGATCC GCTGCAGATC GAGCCGGTGC TCGAACAGCT GCTCGCGCTC GACTGGATCG GTCGCCTCGA AGAACCCGGC GATCCGCGCC TGGTGCTGCT GGTCGATCCG GCCACCACCG TCGTGCAGCC GCTGGCCGGG CGCCTGCTGC TGGCGCCGCT GCTGTCCAAC CAGGCCTTTG CACAGGCCAG CGGCTGGCAG GACACCCGTC TGGCGGACAT CCTGCCGCCG ATGCGCCCAG CCTGA
|
Protein sequence | MIASMNGSPR HTGRSRFRLM RQSLSHAWRE LQHWPWLDTL RTLRLRFRED RLGVTASSLT FTTTIAMVPM ATVMFAVFTA FPMFGTFRKA LETYLIQNLV PDQIAKPVLL QLSQFALKAN RVGAVGLVLL GITAIALLLT IDRALNAIWR VRQPRPIAQR VLVYWAIATL GPLLLGVSLS ITSYALSASK GFVSALPGGV SLMLDLTELA LMAAGMAALF RFVPNTPVRW VHAISGGVFV AIGFDLAKRA LAWYLGLAPT YTTIYGAFAT VPILLIWIYL GWVIVLLGAV IAAYAPSLQM RVVRHAPTPG WRFTLALTLL GELARAQGSE RRGVSAAELA ETLRLDPLQI EPVLEQLLAL DWIGRLEEPG DPRLVLLVDP ATTVVQPLAG RLLLAPLLSN QAFAQASGWQ DTRLADILPP MRPA
|
| |