Gene Lcho_1509 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1509 
Symbol 
ID6161399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1594903 
End bp1595400 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content61% 
IMG OID641664264 
ProductNADH dehydrogenase subunit I 
Protein accessionYP_001790542 
Protein GI171058193 
COG category[C] Energy production and conversion 
COG ID[COG1143] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 
TIGRFAM ID[TIGR01971] NADH-quinone oxidoreductase, chain I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00304735 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCGCCG TGACCAGTGT CAAGGATTTC GTCTCCAGCT TCATGCTGCT GGAGCTGCTC 
AAGGGCCTCA AGCTCACCGG CCGTCATTTC TTCCAGCGCA CGGTGACCGT GCAGTTCCCG 
GAAGAGAAGA CGCCGCTGTC GCCGCGCTTT CGGGGCCTGC ATGCGCTGCG CCGTTATGAA 
AACGGCGAAG AGCGCTGCAT CGCCTGCAAG CTGTGCGAGG CCGTCTGCCC CGCGATGGCG 
ATCACCATCG AGAGCGATGT GCGCGCCGAC GGCAGCCGCC GCACGACGCG CTACGACATC 
GATCTGACCA AGTGCATCTT CTGCGGCTTC TGCGAAGAAA GCTGCCCGGT CGATTCGATC 
GTCGAGACGC ACATCTTCGA ATACCACGGC GAAAAACGCG GTGACCTGTA CTTCACGAAG 
GACATGTTGC TGGCCGTCGG TGATCGCTAC GAACAAGAAA TTGCAGCCAA CAAGGAGGCG 
GACGCCAAGT ACCGCTGA
 
Protein sequence
MSAVTSVKDF VSSFMLLELL KGLKLTGRHF FQRTVTVQFP EEKTPLSPRF RGLHALRRYE 
NGEERCIACK LCEAVCPAMA ITIESDVRAD GSRRTTRYDI DLTKCIFCGF CEESCPVDSI 
VETHIFEYHG EKRGDLYFTK DMLLAVGDRY EQEIAANKEA DAKYR