Gene Lcho_1505 details

Gene Information

• Locus tag: Lcho_1505
• ID: 6161395
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1589578
• End bp: 1590105
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641664260
• Product: NADH-quinone oxidoreductase, E subunit
• Protein accession: YP_001790538
• Protein GI: 171058189
• COG category: [C] Energy production and conversion
• COG ID: [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit
• TIGRFAM ID: [TIGR01958] NADH-quinone oxidoreductase, E subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00485138
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCGAATG CATCCTTCCC GGCGCAAACC GCGCCGTTCT CGGCCGCCAC GCTGGAGCGC 
TTCGCTCGCG AAGTGGCCAA GTACCCGGCC GATCAGAAGC AGTCGGCCGT GATGGCCTGC 
CTGTCGATCG CGCAGCAGGT CAACGGCTGG GTCTCTGCTG AAGCCGAGAA GCAGATCGCC 
GACTACCTCG GCATGCCCGC GATCGCGGTG CACGAGGTGA CGACCTTCTA CAACATGTAC 
AACCAGCAGC CGGTCGGGCA GTTCAAGCTC AACGTCTGCA CCAACCTGCC GTGCCTGTTG 
CGCAACGGCC AGGCGGCGCT GGAGCACCTG TGCCAGAAGC TGGGCGTCGA AGACGGTGGC 
ACCACCGCCG ACGGCCTGTT CACGGTGCAG AAGTGCGAAT GCCTCGGCGC CTGTGCCGAC 
GCGCCGGTGA TGCTGGTCAA CGACCGCCAG ATGATCAGCT ACATGAGCCA CGACAAGCTC 
GACCAGCTGG TCGACACGCT CAAGGCGCAC GCCAAGCAAG GGGCCTGA 

 

Protein sequence

MSNASFPAQT APFSAATLER FAREVAKYPA DQKQSAVMAC LSIAQQVNGW VSAEAEKQIA 
DYLGMPAIAV HEVTTFYNMY NQQPVGQFKL NVCTNLPCLL RNGQAALEHL CQKLGVEDGG 
TTADGLFTVQ KCECLGACAD APVMLVNDRQ MISYMSHDKL DQLVDTLKAH AKQGA