Gene Lcho_1498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1498 
Symbol 
ID6162412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1584118 
End bp1585104 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content71% 
IMG OID641664252 
ProductPIG3 family NAD(P)H quinone oxidoreductase 
Protein accessionYP_001790531 
Protein GI171058182 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases 
TIGRFAM ID[TIGR02824] putative NAD(P)H quinone oxidoreductase, PIG3 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00635299 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACGCGA TCGAGATCTC ACGGCCGGGC GCGCCCGATG TGCTGCGTCT GACGCAGCGT 
GCCGTGCCCG TGGCCGGTGC CGGCGAGGTC TTGATCCGTG TGGCCGCGAG CGGTGTCAAC 
CGGCCCGACG TGCTGCAGCG CAAGGGCGCC TATCCGCCCC CGGCGGGTGC GTCGGATCTG 
CCCGGCCTCG AGCTTGCCGG TGTCATCGAA TCCGGTGACG CGCAGGCGCT GCAGGCGGCC 
GGCCTGGCCA TCGGGCAGCG GGTCTGCGCG CTCGTGACGG GCGGCGGCTA CGCCCAGTAC 
TGCGTCGCGC CGGTCGGGCA ATGCCTGCCG GTGCCGGCCG GTTTCGACGA CGTGCAGGCG 
GCCGCGCTGC CGGAGACGTT CTTCACCGTC TGGTCGAACG TCTTCGAGCG CGCGCGCCTG 
CAGTCGGGCG AGACCTTGCT GGTGCAAGGT GGCACCAGTG GCATCGGCGT GACGGCCATC 
CAGCTGGCCA AGGCGCGTGG CGCCACGGTC ATCGCCACGG CGGGCAGCGA CGACAAGTGC 
CAGGCTTGCC TGGCGCTGGG TGCCGATCAC GCGATCAACT ATCGCAGTCA GGACTTCGCC 
GCCGAGGCCC TGCGCCTGAC GGACGGCCGC GGCGTCGACG TGATCCTCGA CATGGTGGCG 
GGCGACTACG TGGCGCGCGA GGTCAGCTGC CTGGCCGAAG ACGGTCGGCT GGTCATCATC 
GCGGTGCAGG GGGGCGTCAA GGCGTCGTTC GACGCCGGCC TGGTGTTGCG CCGACGCCTG 
ACGATCACGG GCTCGACCCT GCGGGCGCGG CCTGTCGCAT TCAAGGCGGC GATCGCTGCG 
GCACTGCGTG CGCAGGTCTG GCCTCTGCTG GAGTCCCGGC AGGTCCGGCC GGTGATCCAT 
GCCGTGCTGC CGGCGGCGCA GGCGGCCGAT GCGCACGCCC TGATGGAATC GAACCAGCAC 
ATCGGCAAGA TCGTGCTGCA GTGGTGA
 
Protein sequence
MNAIEISRPG APDVLRLTQR AVPVAGAGEV LIRVAASGVN RPDVLQRKGA YPPPAGASDL 
PGLELAGVIE SGDAQALQAA GLAIGQRVCA LVTGGGYAQY CVAPVGQCLP VPAGFDDVQA 
AALPETFFTV WSNVFERARL QSGETLLVQG GTSGIGVTAI QLAKARGATV IATAGSDDKC 
QACLALGADH AINYRSQDFA AEALRLTDGR GVDVILDMVA GDYVAREVSC LAEDGRLVII 
AVQGGVKASF DAGLVLRRRL TITGSTLRAR PVAFKAAIAA ALRAQVWPLL ESRQVRPVIH 
AVLPAAQAAD AHALMESNQH IGKIVLQW