| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1497 |
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| Symbol | |
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| ID | 6162411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1581802 |
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| End bp | 1584105 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664251 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001790530 |
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| Protein GI | 171058181 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00694451 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGT TCAACAAAGT CACCAAGACC TTCCAATGGG GTCAGCACAC CGTCACGCTC
GAGACCGGTG AAATCTCGCG CCAGGCCGGC GGTGCCGTGA TCGTCAACAT CGACGACACC
GTGGTGCTGG CTACCGTGGT GGGCGCCAAG AACGCCAAGC CGGGCCAGGA TTTCTTCCCG
CTGACGGTCG ACTACATCGA GAAGACCTAC GCCGCCGGCA AGATCCCCGG CAGCTTCTTC
AAGCGCGAAG CCAAGCCGTC CGAACTGGAA GTGCTGACCA GCCGCCTGAT CGACCGCCCG
CTGCGCCCGC TGTTCCCGGA AGGCTTCTAC AACGAAGTCC ACGTGGTCGT GCACGTGCTG
TCGCTGAACC CTGAAGCGTC GGCCGACATC GCCGCGCTGA TCGGCTCGAG CGCCGCGCTG
GCGATCTCGG GCATTCCGTT CAACGGCCCG GTGGGCGCTG CCCGCGTGGG TTACGTCAAC
GGCGAATACG TGCTCAACCC GGGCCCGACC CAGCTCAAGT CCTCGAAGAT GGACCTGGTC
GTCGCCGGCA CCGAAGCGGC CGTGCTGATG GTCGAATCCG AGGCCGACCA GCTGACCGAA
GAGGTGATGC TGGGCGCCGT GGTCTACGGC CACGAGCAGG CCAAGGTCGC GATCGCCGCG
ATCAACGAAC TCGTGCGTGA CGCCGGCAAG CCGGCCTGGG ACTGGCAGCC GCCGGCCCGC
AACGAGCCGC TGATCGCCAA GGTCGCCGAG TTCGGCCTGG CCAAGATCGA AGCGGCCTAC
CAGATCCGCA ACAAGCAGGC TCGCACGCAT GCTTGCCGCG CGGCCTACGC CGAAGTGAAG
ATCTCGCTGG CCGAAGCCGG CGTGGTGTTC GACAACGTCG ACGTCGACAA CCTGCTGTTC
GAGCTCGAGG CCAAGACCGT GCGCGGTCAG ATCCTGCAAG GCGAGCCGCG CATCGACGGC
CGCGACACCC GCACCGTGCG CCCGATCGAG ATCCGCACCG GCGTGCTGCC GCGCACCCAC
GGCTCGGCGC TGTTCACGCG TGGCGAGACC CAGGCCCTGG TGGTCGCCAC GCTCGGCACC
GACCAGGACT CGCAGCGCAT TGACGCGCTG GCCGGCGACT TCCGCGACAG CTTCCTGTTC
CACTACAACA TGCCTCCGTT CGCCACCGGC GAAGTCGGCC GCATGGGCAC CACCAAGCGT
CGCGAGACCG GCCACGGCCG CCTCGCCAAG CGCGCGCTGG TGCCGCTGCT GCCCCCGAAG
GACGAGTTCG GCTACACGAT CCGCGTGGTC TCCGAGATCA CCGAATCGAA CGGTTCGTCG
TCGATGGCCT CGGTCTGCGG CGGTTGCCTG GCGATGATGG ATGCCGGCGT GCCGATGAAG
GCGCACGTGG CCGGCATCGC CATGGGCCTG ATCAAGGAAG GCAACCGCTT CGCGGTGCTG
ACCGACATCC TGGGCGATGA AGATCACCTC GGCGACATGG ACTTCAAGGT GGCCGGTACC
ACCGCCGGCG TGACCGCGCT GCAGATGGAC ATCAAGATCC AGGGCATCAC CAAGGAGATC
ATGCAGGTCG CACTGGCGCA GGCCAAGGAA GCGCGCCTGC ACATCCTGGG CAAGATGGTC
GAGGCGATGG GCACGGCCAA CACCGAGGTG TCGAACTTCG CGCCGCGCCT GTACACGATG
AAGATCAACC CCGAGAAGAT CCGTGACGTG ATCGGCAAGG GCGGTTCGGT GATCCGCGCG
CTGACCGAAG AGACCGGCTG CCAGATCGAC ATCGGCGAAG ACGGCACGAT CACGATCGCA
TCGACCGATG CCGACAAGGC CGAACTGGCC AAGAAGCGCA TCGCCGACAT CACCGCCGAA
GCCGAGATCG GCAAGGTCTA CGAAGGTCCG GTGGTCAAGA TCCTCGACTT CGGTGCGCTG
ATCAACATCC TGCCCGGCAA GGACGGACTG CTGCACATCA GCCAGATCGC GCACCAGCGC
GTCGAGAAGG TCACCGACTT CCTGACCGAA GGCCAGGTCG TCAAGGTCAA GGTGCTCGAG
ACCGACGAGA AGGGCCGCAT CAAGCTGTCG ATGAAGGCGC TGATCGAGCG TCCGGAAGGC
ATGGAGTTCG AAGAGCGTGC GCCGCGCCGT GAAGGCGGTT TCGGTGACCG CGGCGACCGT
GGTGATCGCG GCCCGCGCCG TGACCGCGGT GGCGATCGTC CTGAGCGTGG CGAGCGTCCG
GCACGTGCCG AACAGCCTGC GACTGAAGAG TCCGGCGCGC CTGCAGCGGG TCAGCCGCAG
CAGCAGCAAG GTCAGCAGCA GTAA
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| Protein sequence | MSLFNKVTKT FQWGQHTVTL ETGEISRQAG GAVIVNIDDT VVLATVVGAK NAKPGQDFFP
LTVDYIEKTY AAGKIPGSFF KREAKPSELE VLTSRLIDRP LRPLFPEGFY NEVHVVVHVL
SLNPEASADI AALIGSSAAL AISGIPFNGP VGAARVGYVN GEYVLNPGPT QLKSSKMDLV
VAGTEAAVLM VESEADQLTE EVMLGAVVYG HEQAKVAIAA INELVRDAGK PAWDWQPPAR
NEPLIAKVAE FGLAKIEAAY QIRNKQARTH ACRAAYAEVK ISLAEAGVVF DNVDVDNLLF
ELEAKTVRGQ ILQGEPRIDG RDTRTVRPIE IRTGVLPRTH GSALFTRGET QALVVATLGT
DQDSQRIDAL AGDFRDSFLF HYNMPPFATG EVGRMGTTKR RETGHGRLAK RALVPLLPPK
DEFGYTIRVV SEITESNGSS SMASVCGGCL AMMDAGVPMK AHVAGIAMGL IKEGNRFAVL
TDILGDEDHL GDMDFKVAGT TAGVTALQMD IKIQGITKEI MQVALAQAKE ARLHILGKMV
EAMGTANTEV SNFAPRLYTM KINPEKIRDV IGKGGSVIRA LTEETGCQID IGEDGTITIA
STDADKAELA KKRIADITAE AEIGKVYEGP VVKILDFGAL INILPGKDGL LHISQIAHQR
VEKVTDFLTE GQVVKVKVLE TDEKGRIKLS MKALIERPEG MEFEERAPRR EGGFGDRGDR
GDRGPRRDRG GDRPERGERP ARAEQPATEE SGAPAAGQPQ QQQGQQQ
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