| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1494 |
|---|
| Symbol | |
|---|
| ID | 6162311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1578694 |
|---|
| End bp | 1579974 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664248 |
|---|
| Product | putative transporter signal peptide protein |
|---|
| Protein accession | YP_001790527 |
|---|
| Protein GI | 171058178 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00445235 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCT CGTTTTTTCA TACCCGTCGC GGCCTGCTCC TGGCTGCCGT CCTCACCGCT
TGCGGCGTGA ACGCCAGCGC CGCCGAGCCC ATCAAGGTGG CCTTGATCGA GGGCCTGTCG
GGCCCGTTCG CCAATGCCGG CGAGGCGGTG GCGCGCAACA TCGTCTGGGC GATGGAGCGC
GTCAACGCGC GCGGTGGTGT CAAGTTGCCG GGCGGCGCGC GGCCGCTCGA ACTCATGCGC
ATGGACAGCA AGGGCAGCAC CGAGGAGGCG CTGTCGCTGC TGAAAAGCGC CACCGACCAG
AGCGTGGCGG TGGTGATGCA GGGCAACAGT TCGGCTGCGG CTGCGGCGCT GATCGACGCG
CTCAACAAGC ACAACCAGCG CGAGCCGCAG CGCCGCGCGC TGTTGCTCAA CTACTCGGCC
GTCGACCCGG TGCTGACCAA CGAGAAGTGC AGCCCGTGGC ACTTCCGTTT CGACGCCCAT
GCCGACATGC GGCTGGCTGC ACTGACCGAC GTGCTGAAAG ACGACGCCGG CACCCAACGC
GTCTACCTGA TCGGCCAGGA CTACAGCTTC GGCCAGCATG TGCTGCGCGA GGGCCGCAAG
ATGATCGCGG CCAAGCGGCC CGACATCGAG TTCGTCGGCG ACGAGCTGCA CCCGATCGGC
CGGGTGAAGG ACTTCCTGCC CTACGCCACC AAGATCAAGG CCAGCGGCGC GCAGGCGGTG
CTGACCGGCA ACTGGGGCAA CGACCTGACG CTGCTGATCA AGGCGGCGCG CGAGGTCGGT
TTCGAGGGCA AGTTCTACAC CTTCTACGGC AACGCGCTGG GCGTGCCGGC GGCCATCGGC
GAGGCCGGCA TCGGCCGGGT GCTGGCGGTG GCCGAATGGC ATCCGAATGC GGGCGGAAAG
GGATCGGACG CGCTGGTGTC GGCCTTCCGC AAGCGCTTCC CCAAGCCCGA GGACGACTAC
CTGCACGTGC GCATGCAGGT GATGGTGGAG ATGCTGGCGC AGGCCATCGA ACGCGGCCGC
AGCGCCGAGG CCGGCGCGAT CGTCAAGGCC TTGTCGGGCG CGCGCTACGA CGGCGCGAGC
CTCGGCGGCT TGGGCGCTGG CGTGATGCGC GCGGCCGATC ACCAGTACAT CCAGCCGCTC
TACGTCAGCG TGATGCAGCG CGCCGGCAGC GACGGCGTGC CCTTCGACGC CGAAGGCAGC
GGCTTCGGTT TCAAGACCCT GCGCTACGTC GACGCCGCCC GCGCCGAGCA GCCGCATCGC
TGCCAGATGC CGGCCCTCTG A
|
|---|
| Protein sequence | MKTSFFHTRR GLLLAAVLTA CGVNASAAEP IKVALIEGLS GPFANAGEAV ARNIVWAMER
VNARGGVKLP GGARPLELMR MDSKGSTEEA LSLLKSATDQ SVAVVMQGNS SAAAAALIDA
LNKHNQREPQ RRALLLNYSA VDPVLTNEKC SPWHFRFDAH ADMRLAALTD VLKDDAGTQR
VYLIGQDYSF GQHVLREGRK MIAAKRPDIE FVGDELHPIG RVKDFLPYAT KIKASGAQAV
LTGNWGNDLT LLIKAAREVG FEGKFYTFYG NALGVPAAIG EAGIGRVLAV AEWHPNAGGK
GSDALVSAFR KRFPKPEDDY LHVRMQVMVE MLAQAIERGR SAEAGAIVKA LSGARYDGAS
LGGLGAGVMR AADHQYIQPL YVSVMQRAGS DGVPFDAEGS GFGFKTLRYV DAARAEQPHR
CQMPAL
|
|---|
| |