Gene Lcho_1493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1493 
Symbol 
ID6162310 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1577572 
End bp1578645 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content71% 
IMG OID641664247 
Productputative DNA-binding/iron metalloprotein/AP endonuclease 
Protein accessionYP_001790526 
Protein GI171058177 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0533] Metal-dependent proteases with possible chaperone activity 
TIGRFAM ID[TIGR00329] metallohydrolase, glycoprotease/Kae1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0038794 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTGGG CTGACGCTGC GCCGCTGCGG GTGCTGGGCA TCGAGTCGAG TTGCGACGAA 
ACCGGCATCG CGCTGGTCGA ACTGCCGGGC GGTGTGCGCG GCGCCCAGCC GGTGCGGCTG 
CTCGCGCACG CGCTGCACAG CCAGATCGAC ATGCACCAGG CCTACGGCGG TGTGGTGCCC 
GAACTGGCCT CGCGCGACCA CATCCGCCGC GTCGTGCCGC TGCTGCGCCA GACCATGACC 
GAGGCCGGCC ACGCGCTCGC CTCGATCGAC GTGGTGGCCT ACACCCGCGG CCCCGGCCTG 
GCCGGCGCGC TGCTGGTCGG TGCGGGCATG GCGTGCGCGC TGGGCATGGC GCTCGGTAAG 
CCGGTGCTGG GCGTGCATCA CCTCGAAGGC CATCTGCTGT CGCCGTTCCT GTCGGCCGAT 
CCGCCGCAGT TCCCATTCAT CGCGCTGCTG GTGTCGGGTG GCCACACGCA GCTGATGCGG 
GTCGACGGCG TGGGCGCCTA CACGCTGCTC GGCGAGACCA TCGACGACGC CGCCGGCGAG 
GCCTTCGACA AGACCGCCAA GATGCTCGAC CTCGGTTATC CGGGCGGGCC GGCCTTGTCG 
AAACTGGCCG AGCAGGGCGA CCCGACGGCC TTCAAGCTGC CGCGCCCGCT GCTGCGTGGC 
GACAACATCG ACTTCTCGTT CGCCGGCCTC AAGACGGCGG TCTGGATGCA GCAGCAGCGC 
CTCGTCGCAG CCGGCACGAT GACCGAGCAG GCGCGCGCCG ACCTGGCCGC ATCGACGCAG 
GCGGCGATCG TCGACGTGCT GGTCGCCAAG TCGCTGCTGG CGCTCAAAGC CAGCGGCCTC 
AAGCGCATGG TGGTGGCCGG CGGCGTGGGC GCGAACCGGC GCCTGCGTCA ACAGCTCGAC 
GCCCAGTGCG CAAAACGCGG CGTGCGCGTG CACTACCCCG AGCTGCACCT GTGCACCGAC 
AACGGCGCGA TGATCGCGCT CGCCGCGGCC ATGCGCCTGC AGGCCGGCCG GGCCGAGCCG 
AGCCTGGCGT ATCACTTCGA CGTCAAGCCG CGCTGGGATC TCGGCGCGAT CTGA
 
Protein sequence
MNWADAAPLR VLGIESSCDE TGIALVELPG GVRGAQPVRL LAHALHSQID MHQAYGGVVP 
ELASRDHIRR VVPLLRQTMT EAGHALASID VVAYTRGPGL AGALLVGAGM ACALGMALGK 
PVLGVHHLEG HLLSPFLSAD PPQFPFIALL VSGGHTQLMR VDGVGAYTLL GETIDDAAGE 
AFDKTAKMLD LGYPGGPALS KLAEQGDPTA FKLPRPLLRG DNIDFSFAGL KTAVWMQQQR 
LVAAGTMTEQ ARADLAASTQ AAIVDVLVAK SLLALKASGL KRMVVAGGVG ANRRLRQQLD 
AQCAKRGVRV HYPELHLCTD NGAMIALAAA MRLQAGRAEP SLAYHFDVKP RWDLGAI