| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1472 |
|---|
| Symbol | |
|---|
| ID | 6161577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1555395 |
|---|
| End bp | 1555862 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641664226 |
|---|
| Product | sterol-binding domain-containing protein |
|---|
| Protein accession | YP_001790505 |
|---|
| Protein GI | 171058156 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG3154] Putative lipid carrier protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.119197 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCGC ACGACACCGT CCGCACCGAG GCCGTCTCGC CCTTCGATCC GGCCACCTGG
CCGGCGCCGC TGGCGCGCGC CGCCGAGCAC GCCCGCCAGG TCGTGCGTCG CCTGCCGGTG
CAGCCGCCGT CGTTCGTCGC CGCGCGGCTG CTCGACCGCC TGCTGTGGCC CAAGCTCGAC
GCGGGCCAGC GCAGCGCGCT GGCCGGGCGC GTCGTCGAGG TCGAGCTGAT GGAGAGCGGC
GTGCGCGTGC GGCTGATGCT GGGCGAGCGC GGCTTCTCGG TCGCCGGTGG CGCGGCCGAG
CCGGCCGTGC GCATCCGCGC CCGCACCGAC GCGCTGTGGC GCCTGGTGCG CGGCCAGGAC
GATGCCGACC GGCTGTTCTT CGAGCGTGCG CTGGTGATGG AGGGCGACAC CGAATTCGGC
CTGATCCTCA AGAACACGCT CGACGCGATC GGCCCGCTCT GGCAGTGA
|
|---|
| Protein sequence | MNPHDTVRTE AVSPFDPATW PAPLARAAEH ARQVVRRLPV QPPSFVAARL LDRLLWPKLD
AGQRSALAGR VVEVELMESG VRVRLMLGER GFSVAGGAAE PAVRIRARTD ALWRLVRGQD
DADRLFFERA LVMEGDTEFG LILKNTLDAI GPLWQ
|
|---|
| |