| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1471 |
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| Symbol | |
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| ID | 6161576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1554445 |
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| End bp | 1555398 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664225 |
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| Product | peptidase U32 |
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| Protein accession | YP_001790504 |
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| Protein GI | 171058155 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.134915 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCC ATTCCACGCC GCTCGATCTC ACGGTCGGCC CGCTCCAGTA CTGGTGGCCA
CGCGCCACGC TGATCAACTT CTATGCCGAG CTGGCCGACA GCCCGGCGCG CCGCATCGTG
CTGGGCGAGG TGATCTGCTC GCGCCGCAAC GAGTTCTCGA CCGAAGACTG GCTGGCGCTG
GCGCGTGACC TGACGGCCGC CGGCAAGACC GTGCTGCTGG CGAGCATGCC GCTGCTGATG
TCCGAGGCCG AGCTGCGCAC GCTGCGCCGC ATCGCCGAGC AGGACGAGTT CGCCGTCGAG
GCGGGTGATG CGTCCGCGCT GCAGGTGCTG GCGCGCCGGC CGGCCGAACA GGCTGCGCGG
CATCCGATCA CGCTCGGGCC GCACCTCAAC ATCTACAGCC ACGGCGCGCT GATCGAACAT
GCCGCGCTCG GCGCCGACCG CTGGGTCGCG CCGCTCGAGT TGTCGCTCGA TGCCATCGCG
CGCATCAATC CGCCCGACGC GCCGGTGCCC GGTGTGGCCG GACCGGTGGC GAGCGAGGTG
TTCGGTTTCG GCCGCATGCC GCTGGCGTTC TCGGCGCGCT GCTTCACCGC GCGCCACCAT
CGGCTCAACA AGGACGAGTG CGATTTCCGC TGCCGCGACG ACGCCGACGG CCTGCTGTTG
AGCAGCACCG AGGGCCAGCC TTTCCTCGTG CTCAACGGCA TCCAGACCCA GTCCGCCGGC
CTGCAATGCC TGATCGGCGA CGCAGCGGCG ATGCGTGCGG CCGGCGTGTC GAGCGTGCGT
CTGTCACCTT GCGGCCAGGG CTTTGCGCGT GTGCTGACGC TGTTCGATCA GGTGCTCAAC
CACGGCGAGC CCGCCGCCGA CGCCATCGCC GAACTGGCCA CGCTGGGCTT GCCCGGCGCG
CTGGTCAACG GCTACGCCCA TCGCCAACCC GGCCTCGAGG AGATCTCCGC ATGA
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| Protein sequence | MTSHSTPLDL TVGPLQYWWP RATLINFYAE LADSPARRIV LGEVICSRRN EFSTEDWLAL
ARDLTAAGKT VLLASMPLLM SEAELRTLRR IAEQDEFAVE AGDASALQVL ARRPAEQAAR
HPITLGPHLN IYSHGALIEH AALGADRWVA PLELSLDAIA RINPPDAPVP GVAGPVASEV
FGFGRMPLAF SARCFTARHH RLNKDECDFR CRDDADGLLL SSTEGQPFLV LNGIQTQSAG
LQCLIGDAAA MRAAGVSSVR LSPCGQGFAR VLTLFDQVLN HGEPAADAIA ELATLGLPGA
LVNGYAHRQP GLEEISA
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