Gene Lcho_1465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1465 
Symbol 
ID6161540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1547472 
End bp1549328 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content73% 
IMG OID641664219 
Productvon Willebrand factor type A 
Protein accessionYP_001790498 
Protein GI171058149 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4548] Nitric oxide reductase activation protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.421906 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAGT GGGTCGGCCA GCAATGGCAT CGTTTCATCA GCCGCGCCGC CGACTGCCAG 
CACCCGCAGG CGGCGGTCAG CCTGGCGCAG ATGGAGCGCA GCATCGGCCT GCTGTTTCGC
GCCGGCGGAG GTGCCCGCGC GGTGCGCCTG ACCGGCGCCG CCGACAGCCG TGTCGGCGGC
ACGCGCAGCT GGCTGCAGCG TGTGGCCGGC AGCGGCACGC ATGCGCCGCT GCCGCGGCTC
GAATCCGACG TGCTGGCGCT GCCGCCGACG CTGGCGGTGT TCGACGACAT CGCGCTCAAC
CGCGCGCTCT ACCTGTGGCT GGCCGCACTC GCGTCGGTGA TCGACGGTTA CGGCGAGCAC
AACGGCGATG GCGGCGGCGA CTGGATCGGC AGCAACCTGC TCGCCACCCG CGTCGCGCTG
CACGCCTTTC CCGGGTTGCG GGAACGCCAC GCCCAATTGG TCGAAGCCCA GTTGGCGCTG
CGCCCCGACC TGTCGACGCT GCGCGGCCCG GCCGCTGCCG CCGAGGCCCA GGTGCAGCGC
GCCCTGCGTG GCGAGCGCCT GCACGAAGGC CCGGCCCTGC GCCCGCAGGA CGTGGCGCCG
GTCTGGTTGT GGCTCGACGT GGCCGAGGCG ACACGCGGCG CCGACGCGGT GCGCAATCGC
CCCGATCCCG AATCGAGCGA GCCCGCGCAA CGCCCACCGT CGTCCGGATC GAAGCGCCGC
CGCAAGGCCG AAGCCGTCAG CGACGAGCGC GACAAGGCGC CGCTGATGAT GTTCTTCCGC
GCCGAGTCGA TCCTGTCGTG GGGCGAGTTC ATCAAGGTCA ACCGCGCCAG CGACGACGAC
GAGGATCCGC AGGCCCAGGC CGTGGCCGAC GACATGGACG TGCTGGCGAT CGCGCCCGAT
GGCCGCAGCG CGGCATCGCG CGTCAAGTTC GACCTCGACC TGCCCAGCGC CGCCGCCGAC
GACCGCCCGC TCGGCCCCGG CCTGCGCCTG CCCGAGTGGG ACTGGAAACG CGCCCGCCTG
CTGCCCGAGC ACTGCGCGCT GCAGACGCTG ATCAGCACGC CGGCCAAGCC CTTCGTGCCA
CCACCGGCCT TGCGCGCCAC CGCGCGGCGC ATCCGCCGGC GCATGGAGGT GCTGCGCGCC
GGGCTGGGCC GCGAACGGGG CCGCCCCGAT GGCGACGAGC TGGACCTGGA TGCCTTCGTG
CGCCATCAGG TCGACGCCGC CAGCGCGCCG CACCACGAGC TGCCCGCCGT GTTCTCGCGC
CGCGTGCGCC GCGAGCGCAG CCTGGCCACG CTGCTGCTGG CCGACCTGTC GCTGTCGACC
GACGCGCACG TCGACAACCA CTCGCGCGTG ATCGACGTGA TCCGCGATGC GCTCTACGTC
TTCGGCGAGG CGCTGTCCGC CAGCGGCGAT CCGTTCGAGA TGCTCGGCTT CAGCTCGGTG
CGGCGCCAGA ACGTGCGCAT GCAGCACCTC AAGGGCTTCG ACGAGCCCTG GCGCGGTGGC
GCCTGCGACC GCGTCGGCGC GATCAGGCCG GGCTACTACA CGCGCATGGG CGCGGCCATC
CGCTGCGCCA CGCTGCGCCT GCAGGCGCGC CCCGAACGCC AGCGCCTGCT GCTGATCCTG
ACCGACGGCA AGCCCAACGA CCTCGATGTC TACGAGGGCC GCTACGGCCT GGAGGACACC
CGCCACGCGG TGCAGGCCGC GCGCGACGCC GGCCTGGTGC CGTTCTGCGT CACGATCGAC
GAGACCGCGC ACGACTACCT GCCGATGCTG TTCGGCCAGC GCGGTTATGC GCTGGTGCAC
CGGCCGCAGG ACCTGGTGCA GCGGTTGGCG CAGGTGCATG CGGCGCTGAC GCGCTGA
 
Protein sequence
MEEWVGQQWH RFISRAADCQ HPQAAVSLAQ MERSIGLLFR AGGGARAVRL TGAADSRVGG 
TRSWLQRVAG SGTHAPLPRL ESDVLALPPT LAVFDDIALN RALYLWLAAL ASVIDGYGEH
NGDGGGDWIG SNLLATRVAL HAFPGLRERH AQLVEAQLAL RPDLSTLRGP AAAAEAQVQR
ALRGERLHEG PALRPQDVAP VWLWLDVAEA TRGADAVRNR PDPESSEPAQ RPPSSGSKRR
RKAEAVSDER DKAPLMMFFR AESILSWGEF IKVNRASDDD EDPQAQAVAD DMDVLAIAPD
GRSAASRVKF DLDLPSAAAD DRPLGPGLRL PEWDWKRARL LPEHCALQTL ISTPAKPFVP
PPALRATARR IRRRMEVLRA GLGRERGRPD GDELDLDAFV RHQVDAASAP HHELPAVFSR
RVRRERSLAT LLLADLSLST DAHVDNHSRV IDVIRDALYV FGEALSASGD PFEMLGFSSV
RRQNVRMQHL KGFDEPWRGG ACDRVGAIRP GYYTRMGAAI RCATLRLQAR PERQRLLLIL
TDGKPNDLDV YEGRYGLEDT RHAVQAARDA GLVPFCVTID ETAHDYLPML FGQRGYALVH
RPQDLVQRLA QVHAALTR