Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1465 |
Symbol | |
ID | 6161540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1547472 |
End bp | 1549328 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641664219 |
Product | von Willebrand factor type A |
Protein accession | YP_001790498 |
Protein GI | 171058149 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4548] Nitric oxide reductase activation protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.421906 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAGT GGGTCGGCCA GCAATGGCAT CGTTTCATCA GCCGCGCCGC CGACTGCCAG CACCCGCAGG CGGCGGTCAG CCTGGCGCAG ATGGAGCGCA GCATCGGCCT GCTGTTTCGC GCCGGCGGAG GTGCCCGCGC GGTGCGCCTG ACCGGCGCCG CCGACAGCCG TGTCGGCGGC ACGCGCAGCT GGCTGCAGCG TGTGGCCGGC AGCGGCACGC ATGCGCCGCT GCCGCGGCTC GAATCCGACG TGCTGGCGCT GCCGCCGACG CTGGCGGTGT TCGACGACAT CGCGCTCAAC CGCGCGCTCT ACCTGTGGCT GGCCGCACTC GCGTCGGTGA TCGACGGTTA CGGCGAGCAC AACGGCGATG GCGGCGGCGA CTGGATCGGC AGCAACCTGC TCGCCACCCG CGTCGCGCTG CACGCCTTTC CCGGGTTGCG GGAACGCCAC GCCCAATTGG TCGAAGCCCA GTTGGCGCTG CGCCCCGACC TGTCGACGCT GCGCGGCCCG GCCGCTGCCG CCGAGGCCCA GGTGCAGCGC GCCCTGCGTG GCGAGCGCCT GCACGAAGGC CCGGCCCTGC GCCCGCAGGA CGTGGCGCCG GTCTGGTTGT GGCTCGACGT GGCCGAGGCG ACACGCGGCG CCGACGCGGT GCGCAATCGC CCCGATCCCG AATCGAGCGA GCCCGCGCAA CGCCCACCGT CGTCCGGATC GAAGCGCCGC CGCAAGGCCG AAGCCGTCAG CGACGAGCGC GACAAGGCGC CGCTGATGAT GTTCTTCCGC GCCGAGTCGA TCCTGTCGTG GGGCGAGTTC ATCAAGGTCA ACCGCGCCAG CGACGACGAC GAGGATCCGC AGGCCCAGGC CGTGGCCGAC GACATGGACG TGCTGGCGAT CGCGCCCGAT GGCCGCAGCG CGGCATCGCG CGTCAAGTTC GACCTCGACC TGCCCAGCGC CGCCGCCGAC GACCGCCCGC TCGGCCCCGG CCTGCGCCTG CCCGAGTGGG ACTGGAAACG CGCCCGCCTG CTGCCCGAGC ACTGCGCGCT GCAGACGCTG ATCAGCACGC CGGCCAAGCC CTTCGTGCCA CCACCGGCCT TGCGCGCCAC CGCGCGGCGC ATCCGCCGGC GCATGGAGGT GCTGCGCGCC GGGCTGGGCC GCGAACGGGG CCGCCCCGAT GGCGACGAGC TGGACCTGGA TGCCTTCGTG CGCCATCAGG TCGACGCCGC CAGCGCGCCG CACCACGAGC TGCCCGCCGT GTTCTCGCGC CGCGTGCGCC GCGAGCGCAG CCTGGCCACG CTGCTGCTGG CCGACCTGTC GCTGTCGACC GACGCGCACG TCGACAACCA CTCGCGCGTG ATCGACGTGA TCCGCGATGC GCTCTACGTC TTCGGCGAGG CGCTGTCCGC CAGCGGCGAT CCGTTCGAGA TGCTCGGCTT CAGCTCGGTG CGGCGCCAGA ACGTGCGCAT GCAGCACCTC AAGGGCTTCG ACGAGCCCTG GCGCGGTGGC GCCTGCGACC GCGTCGGCGC GATCAGGCCG GGCTACTACA CGCGCATGGG CGCGGCCATC CGCTGCGCCA CGCTGCGCCT GCAGGCGCGC CCCGAACGCC AGCGCCTGCT GCTGATCCTG ACCGACGGCA AGCCCAACGA CCTCGATGTC TACGAGGGCC GCTACGGCCT GGAGGACACC CGCCACGCGG TGCAGGCCGC GCGCGACGCC GGCCTGGTGC CGTTCTGCGT CACGATCGAC GAGACCGCGC ACGACTACCT GCCGATGCTG TTCGGCCAGC GCGGTTATGC GCTGGTGCAC CGGCCGCAGG ACCTGGTGCA GCGGTTGGCG CAGGTGCATG CGGCGCTGAC GCGCTGA
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Protein sequence | MEEWVGQQWH RFISRAADCQ HPQAAVSLAQ MERSIGLLFR AGGGARAVRL TGAADSRVGG TRSWLQRVAG SGTHAPLPRL ESDVLALPPT LAVFDDIALN RALYLWLAAL ASVIDGYGEH NGDGGGDWIG SNLLATRVAL HAFPGLRERH AQLVEAQLAL RPDLSTLRGP AAAAEAQVQR ALRGERLHEG PALRPQDVAP VWLWLDVAEA TRGADAVRNR PDPESSEPAQ RPPSSGSKRR RKAEAVSDER DKAPLMMFFR AESILSWGEF IKVNRASDDD EDPQAQAVAD DMDVLAIAPD GRSAASRVKF DLDLPSAAAD DRPLGPGLRL PEWDWKRARL LPEHCALQTL ISTPAKPFVP PPALRATARR IRRRMEVLRA GLGRERGRPD GDELDLDAFV RHQVDAASAP HHELPAVFSR RVRRERSLAT LLLADLSLST DAHVDNHSRV IDVIRDALYV FGEALSASGD PFEMLGFSSV RRQNVRMQHL KGFDEPWRGG ACDRVGAIRP GYYTRMGAAI RCATLRLQAR PERQRLLLIL TDGKPNDLDV YEGRYGLEDT RHAVQAARDA GLVPFCVTID ETAHDYLPML FGQRGYALVH RPQDLVQRLA QVHAALTR
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