Gene Lcho_1455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1455 
Symbol 
ID6162849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1535705 
End bp1536382 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content69% 
IMG OID641664209 
Producthypothetical protein 
Protein accessionYP_001790488 
Protein GI171058139 
COG category[S] Function unknown 
COG ID[COG4380] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCACA CCGCCATCCC ATCCGCGGCC CTCGTGAAGG GGTTCGTGCT GGCCTGCGCC 
GCCGCGCTGC TGGCCGGCTG CGCCACGCCG CCGACCTTCG ACTACACCGC CTACCGGGGC 
AGCCGCCCGC AGTCGATCCT GGTGCTGCCG CCGGTCAACA ACTCGCCCGA CGTCAACGCC 
ACGTTCAGCG TGCTGTCGCA GGTGACACAT CCGCTGGCCG AGTCGGGCTA CTACGTGATG 
CCGGTCAGCC TGGTGGCCGA GACCTTCAAG CAGAACGGTG TCTCCGAGCC GGCCGAGATG 
CACGCGATCG ACCGCGCCAA GCTGCGCGAG ATCTTCGGCG CCGACGCCGC GCTCTACCTC 
ACGGTGACGA AATACGGCAC CACCTACATG GTGTTCGACA GCGCCGCCGT GGTGTCGGCC 
AGCGCCCGGC TGGTCGACCT GAAGACCGGC CAGGAGCTCT GGAGCGGCTC GGCCACCGCC 
TCGAGTTCGG AGCAGAACAA CAACAACCAG GGCGGACTGG TCGGCCTGCT GGTCACGGCG 
GTGGTCAAGC AGATCATGCA CAGCGTGGTC GACAGCAGCC ACCCGGTGGC CGGCATCGCC 
AGCCAGCGCC TGCTGTCGGC GGGGCGGCCG AACGGCATGC TGTACGGGCC GCATTCGCCC 
AACTACGGCA AGGACTGA
 
Protein sequence
MSHTAIPSAA LVKGFVLACA AALLAGCATP PTFDYTAYRG SRPQSILVLP PVNNSPDVNA 
TFSVLSQVTH PLAESGYYVM PVSLVAETFK QNGVSEPAEM HAIDRAKLRE IFGADAALYL 
TVTKYGTTYM VFDSAAVVSA SARLVDLKTG QELWSGSATA SSSEQNNNNQ GGLVGLLVTA 
VVKQIMHSVV DSSHPVAGIA SQRLLSAGRP NGMLYGPHSP NYGKD