| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1449 |
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| Symbol | |
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| ID | 6161122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1527582 |
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| End bp | 1530419 |
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| Gene Length | 2838 bp |
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| Protein Length | 945 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664203 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001790482 |
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| Protein GI | 171058133 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCTT CCCTGCTCTT TGCCCCCATC CGTCGCCTCC TGCGCTGGCG GTTCGCAACC
GCCCTCTTGC TCGCGCTGGT ATCGCCGTTG GCGCCGGCGG ACGGCGATTC CGCTCACCCG
CCTTCCGGCG ACACCCGCCG GCAGACGCCG GCCGACAAGC CGGGCCTGCA AGGCAAGAGC
GTCCTCATCC TGTCCGGCAC GCAATACGGG ACCCCGGTAA CGGACCTCAC GGTTGCCGGA
GCCGTCGCGT CCCTCAGGAG CAAGGGCATC GGCGGCGCGC AGATCTACGT CGAGCATCTC
GACCTCGCCC GCAACAGGAA TCCGCGATGG CGTGCCGAGC TGGCAGACGT GCTGCGGGGC
AAGCTCGGCA AGTCCGATGT GGGCATCGTG ATCGTCCTGC ACCAGTTGGC GCTGGATTTC
CTGGCCCAGG AGGGCCACGA CCTTGTGCCG CCCGGGACGC CCGTACTGAC CAACTTCGTC
ACCACGCCCG ACGTGGCCTG GCGCGCAACA CCCCATCCCG TGCTGAACAT CACCGAGCGG
GCAGACATCG ACGGCACGAT CCGCCTCGGG CTCGAGCTCT TTCCCCGCAC GCGGCGTCTG
TTCGTCGTGA CCGGTGCCGA CGAGGCACAG CCCCTGTTCC ATGCGCAGGT CGCGCAGGCG
GTGGCTGCCA TGCCGGGCAA GCCGGAGATC GAGACCGCGG CAGCGTTGTC CTACGAGGAG
ATGCTGCAGC GTGTCTCGGC GCTGCCACCC GACACCCTGG TCCTGCTCGG CATCTACTTC
AATGACCGGA CGGGGCGCCG TCTTCTTCCG GCCGAAGTGG CCACCGCAGT TGCCAAGCGT
GCCAATGCGC CGGTGGTGGG CCTCTACGAT CTGCACATCT GGAAGGGTCT GACAGGGGGG
TCGGTCGTCG TCCCCGAGGA GGTCGGCCGA CGCACCGGGG AAATCGGTTT CGACATCCTC
TCCGGCGCAC GCCGGCTCGA TGCCAGCGCG GCCGAGGCCG GAATGCCTGC ACAACCGATG
GTCGACTGGG CGCAACTCGA ACGCTGGGGG GGCGATCCCG CGAAACTCCC CGCCGGCACC
GTCTTCCTGA ACCGCCCGCG CACGCTGTGG GACGAGTACC GCAACGCCGC CATCGCGGGT
TCTGCCGCGA TCCTGGTGCT GACGGCGCTG GTCGCTGCGC TGGCCGTCCA GAACGCGCGC
CGCAAGCGGG CCGAACACAA GCTGCGAGAC ACCACGATCC GGCTGGAAGC AACGCTCGAT
GCCTTGCCCG ACCTGATGTT CCGGATCGAC CGGGACGGGC GGATCGAGGA ATTCCGTTCG
TCTGCCACCG ACCAGCTGTA CGCCTCCCCG TCGGCGTTCA TGGGCAAGAC GTTCCGCGAG
GTGGTGCCGG AACCGGCCGC CCGCGTCCTC GATGAGGCCC TGGAGGACGC CGCGCGCTCG
GGGTCGAGCC GCGGCGCCAC CTACGCGATT GACATCGGCG CGGAACAACG GTGGTTCGAA
GTCTCGATGT CGGCGATGGC GGGGGCGGAC GATCGTCCGG CGCACTTCAT TCTCCTGCTG
CGCGACATCA CCGAGCGCAA GCGCGCGGAG CAGACGCTCG ATGACTATCG CCAGGGACTG
GAGGCGATGG TCGGGGAACG GACCGCCCAG CTGAACGAGG CCACGCGCAG GGCCGAGGCG
GCGAATGTGG CGAAGAGCGC CTTCCTCGCC AACATGAGCC ACGAGATCCG CACGCCGCTC
AATGCCATCG TCGGCATGTC GCACCTGATC CGGCTGGCGG GCCTGCCGCC GGCACAGACC
GAGCGGCTCG ACAAGCTCAA GGCCGCCGCC ACCCACCTGC TGGAGATCCT CAACGCGATC
CTCGACCTCT CGAAGATCGA CGCCGGAAAG TTCACGCTCG AGGAGATTCC GCTGCGTGTC
GAGTCGATCA TCGCCAACAC GCTGTCGATG CTGGACGACC GGGCCCGGGC CAAGAGCCTG
CGACTGACCA GCGAAGTGGA CCGGATGCCG CGCAGCCTGG TGGGCGATCC CACCCGCCTG
CAGCAGGCGC TGCTGAACTA CGCCAACAAC GCGATCAAGT TCACCGACGC GGGCTCGGTG
ACTGTGCGTG CCCGGCTCGT CGAGCAGCAC GCCGAGGACG TGCTGGTGCG TTTCGAGGTC
GAGGACACGG GCATCGGCAT CGACGACGCC GCGATCGGCA ATCTGTTCTC GGCATTCCAG
CAGGCAGACA GCGCGACGAC ACGCAGGTCG GGAGGCACCG GGTTGGGGCT GGCGATCACG
AAGAAGCTGG CGGAACTGAT GAAGGGAAAC GCAGGCGTCA CGAGCACGCC GGGCGCAGGC
AGCGTGTTCT GGTTCATGGC GCGCCTGAGA AAGGCGCAGG AGCCCGTGAC GACCGATGGA
GGCGCGAAGG CTCCGGCCGC GGCGGCGATC CTGAAGGCGC GCCATGCGGG CATGCGCCTG
CTGGTGGTCG AGGACAACGA TATCAACCGC GAGGTCGCGC AGGCCCTTCT CGAGGAAGTG
GGGTTCGTGG TCGACCTGGC CGAGGACGGC GCGGAGGCGG TGGCGAAAGT GGCCAGCCAC
CCGTACCGGC TGGTGCTGAT GGACATGCAG ATGCCCAGGA TGGACGGGCT GGAGGCGTCG
CAGGAGATTC GCAGGACCCG GACCACGCAG AACCTGCCGA TCATTGCCAT GACCGCCAAC
GCCTTCAGCG AGGACAGGGC CAGGTGCCTG GCGGCGGGCA TGGACGACTT CGTGAGCAAG
CCCGTCGACC CGGAGGCGCT CTATGCGGTG CTGCTGGGCT GGCTGGACAA GGTGCCGGAG
ACCGCCGCTG CGAACTGA
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| Protein sequence | MTSSLLFAPI RRLLRWRFAT ALLLALVSPL APADGDSAHP PSGDTRRQTP ADKPGLQGKS
VLILSGTQYG TPVTDLTVAG AVASLRSKGI GGAQIYVEHL DLARNRNPRW RAELADVLRG
KLGKSDVGIV IVLHQLALDF LAQEGHDLVP PGTPVLTNFV TTPDVAWRAT PHPVLNITER
ADIDGTIRLG LELFPRTRRL FVVTGADEAQ PLFHAQVAQA VAAMPGKPEI ETAAALSYEE
MLQRVSALPP DTLVLLGIYF NDRTGRRLLP AEVATAVAKR ANAPVVGLYD LHIWKGLTGG
SVVVPEEVGR RTGEIGFDIL SGARRLDASA AEAGMPAQPM VDWAQLERWG GDPAKLPAGT
VFLNRPRTLW DEYRNAAIAG SAAILVLTAL VAALAVQNAR RKRAEHKLRD TTIRLEATLD
ALPDLMFRID RDGRIEEFRS SATDQLYASP SAFMGKTFRE VVPEPAARVL DEALEDAARS
GSSRGATYAI DIGAEQRWFE VSMSAMAGAD DRPAHFILLL RDITERKRAE QTLDDYRQGL
EAMVGERTAQ LNEATRRAEA ANVAKSAFLA NMSHEIRTPL NAIVGMSHLI RLAGLPPAQT
ERLDKLKAAA THLLEILNAI LDLSKIDAGK FTLEEIPLRV ESIIANTLSM LDDRARAKSL
RLTSEVDRMP RSLVGDPTRL QQALLNYANN AIKFTDAGSV TVRARLVEQH AEDVLVRFEV
EDTGIGIDDA AIGNLFSAFQ QADSATTRRS GGTGLGLAIT KKLAELMKGN AGVTSTPGAG
SVFWFMARLR KAQEPVTTDG GAKAPAAAAI LKARHAGMRL LVVEDNDINR EVAQALLEEV
GFVVDLAEDG AEAVAKVASH PYRLVLMDMQ MPRMDGLEAS QEIRRTRTTQ NLPIIAMTAN
AFSEDRARCL AAGMDDFVSK PVDPEALYAV LLGWLDKVPE TAAAN
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