Gene Lcho_1448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1448 
Symbol 
ID6161121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1526145 
End bp1527401 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content70% 
IMG OID641664202 
Productradical SAM domain-containing protein 
Protein accessionYP_001790481 
Protein GI171058132 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCGCA TCAGCCAATA CATGCGCGAA CTCGCGCAAG CCCATCGCGG CGGTGTGTAC 
CCGGCCCCCC GCCGCGCAGC GGCCGGGGGC TCCATGACGG GTCCGGTCGT GATCTGGAAC
CTGATCCGGC GCTGCAACCT GACGTGCCAG CACTGCTACG CGCTGTCGGC CGATCACGAA
TACAGCGGCG AGCTGTCGGG CGCCGAGGTC GGCACGGTGA TGGACGACCT CAAGGCATTC
CACGTGCCGG TGCTGATCCT CTCGGGCGGC GAGCCACTGA TGCGGCCGGA CATCTTCGAG
ATCGCCGCAC GCGCCAAGGC GATGCGCTTC TACATCGGCC TGTCGACCAA CGGCACGCTG
ATCGACGAGC CGATGGCCGA CCGGGTGGCC GCAGCCGGCT TCGACTACGT CGGCATCAGC
CTGGACGGCC TGCGCGAAAC ACACGACAAG TTCCGCCGCC TCGACGGTGC CTTCGACCGC
AGCCTGGCCG CCGTGCGGCT GCTGCACGCA CGCGGCGTCA AGGTCGGCCT GCGTTTCACG
ATGACGGCGA TGAACGCGCA CGACCTGCCG GCGCTGCTGC AGCTGATGCG CGACGAGCAG
GTCGACAAGT TCTACTTCTC GCACCTCAAC TACGCCGGCC GCGGCAACAT CCACCGCGGC
CGCGATGCCC AGTTCGCCGC CACCCGCGAG GCGATGGACC TGCTGTTCGA GACCGCCTGG
CAGGCTGCGC TGGAAGGTCG GGACGAGGAG TACGTGACCG GCAACAACGA CGCCGACGGG
CCGTACCTGC TGCAGTGGGT GGCCGAGCAC CTGCCGCATC TGAGCCCGCT GGTGCACGAG
TCGCTGCGCC AGCGGCTGGT GGCCTGGGGC GGCAATTCCA GCGGCGTGAA CGTGGCCAAC
ATCGACAACC TCGGCAACGT GCACCCCGAC ACCATGTGGT GGCACCACAC GCTGGGCAAC
GTGCGCGAGC GGCCGTTCTC GGCCATCTGG GCCGACACCT CCGACCCGCT GATGGCGGGA
CTGAAGGCCA GGCGGCGGCC GGTCGGCGGG CGCTGCGGCG GCTGCGCGCA CTTCGCCATC
TGCGGCGGCA ACACCCGCGT GCGCGCCCAG CAGCTCACCG GCAACGCCTG GGCCGAAGAC
CCGGGCTGCT ACCTGAGCGA CGCGGAAATC GGCGTGAGCG GCAACGGCGA GCGGGTCAAG
GTGACGGCGT TCAGTGGTGG ACGCAAGAGG GTCGGGGTAC CGGTGGTGGC GGGGTGA
 
Protein sequence
MFRISQYMRE LAQAHRGGVY PAPRRAAAGG SMTGPVVIWN LIRRCNLTCQ HCYALSADHE 
YSGELSGAEV GTVMDDLKAF HVPVLILSGG EPLMRPDIFE IAARAKAMRF YIGLSTNGTL
IDEPMADRVA AAGFDYVGIS LDGLRETHDK FRRLDGAFDR SLAAVRLLHA RGVKVGLRFT
MTAMNAHDLP ALLQLMRDEQ VDKFYFSHLN YAGRGNIHRG RDAQFAATRE AMDLLFETAW
QAALEGRDEE YVTGNNDADG PYLLQWVAEH LPHLSPLVHE SLRQRLVAWG GNSSGVNVAN
IDNLGNVHPD TMWWHHTLGN VRERPFSAIW ADTSDPLMAG LKARRRPVGG RCGGCAHFAI
CGGNTRVRAQ QLTGNAWAED PGCYLSDAEI GVSGNGERVK VTAFSGGRKR VGVPVVAG