Gene Lcho_1446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1446 
Symbol 
ID6160372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1525174 
End bp1525665 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content68% 
IMG OID641664200 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001790479 
Protein GI171058130 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.855842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTCGC TTGACGATCT GCGCCTGATG AGCCGCCTGC ATGGCGGATT CCCGCTCACC 
GACCGGCCGT TTGCCGATGT GGCGGCCGAA CTCGGTTGCA GCGAAGACAC CGTGATCGAG 
CGCCTGCACC ACCTGCTGGC GCACGGCCTG CTGACGCGTT TCGGCCCGCT GTTCCAGATC 
GAGCGCGCCG GTGGCCAGTT CGTCCTGGCG GCGATGGCCG TGCCGCCGGA GCGTTTCGAT 
GCGGTCGCCG TGCAGGTCAA CGCGCTGCCC GAGGTGGCGC ACAACTACCG CCGCGATCAC 
GCGCTGAACA TGTGGTTCGT GATCGGTGCC GAGTCGCCCG ACAAGGCCCT GGCCGCGCTG 
CAGCGCATCG AGGCACAGAC CGGCCTGGCC GTCCATGCGT TCCCGAAGGA GCGCGAGTTC 
TTTGTCGAAC TGCGATTGCC GCTGGAGGCC ATCGGCGTCG ACCTGCCACA GGAGCGCCGC 
GATGCCGCTT GA
 
Protein sequence
MLSLDDLRLM SRLHGGFPLT DRPFADVAAE LGCSEDTVIE RLHHLLAHGL LTRFGPLFQI 
ERAGGQFVLA AMAVPPERFD AVAVQVNALP EVAHNYRRDH ALNMWFVIGA ESPDKALAAL 
QRIEAQTGLA VHAFPKEREF FVELRLPLEA IGVDLPQERR DAA