| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1444 |
|---|
| Symbol | |
|---|
| ID | 6160370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1522963 |
|---|
| End bp | 1524156 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641664198 |
|---|
| Product | cytochrome d1 heme region |
|---|
| Protein accession | YP_001790477 |
|---|
| Protein GI | 171058128 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3391] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02276] 40-residue YVTN family beta-propeller repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCC GACACCTGCT GGCCGGCCTG GCCACGTTGC CTGCCCTCTC CACGCTCGGC
CTGATGACGG GCTGCGCCAC GGCGCCGCAA CGCGGCACCG GCGACCTGGG CGTGATCGTC
GCGCGTGCCA GCGGCCGGCT GGCGATCGTC GACACCAGCG CGCGCACGCT GCTCGGCGAA
GTGGCGGGGC TGGGCGACCT GTCGCACGCC TCGGTGGTGT TCTCGCGTGA CGGCCTGCAC
GCCTACGTGT TCGGCCGCGA CGGCGGTCTG AGCAAGGTCG ACCTGCTGCA GCGCCGCCTG
GTGGCGCGCG TGATGCAGGC CGGCAACTCG ATCGGCGGCG CCATCAGCGC CGACGGCACG
CTGGTGGCGG CGCAGAACTA CACGCCCGGC GGCGTCAAGG TGTTCGATGC CCGCACCCTC
ACGCTGCTGG CCGACATCCC GGCCGAATAC GGGGCGGCCA AGCCATCGCG GGTGGTCGGC
CTGGTCGACC TGCCGGGCCG GCGCTTCGCC TTCAGCCTGT TCGATGCCGA CGCGATCTGG
ATCGCCGACC TGAGCGACAC CACGCACCCG AAGCTCACCC AGCTGCCCGG CATCGGCCGC
CAGCCCTACG ACGCGCTGGT CACGCCCGAT GGCCGCCACT ACATCGCCGG CCTGTTCGGC
GAGGACGGCC TGGCGCTGGT CGACCTGTGG GCCGAGACGC CCACGGCACG CCGCATCCTC
GGCGGCTACG GCCGTGGCGA GCAGCCGCTG CCGGTCTACA AGATGCCGCA TCTGCGCGGC
TGGGCGGTGG CCGGCCGGCG CGCCTACCTG CCCGCGATCG GCCGCCACGA GGTGCTGGTG
GTCGACATCG AGACCTGGGC CGAGGTCGGC CGCATCCCGG TCGCCGGCCA GCCGGTGTTC
GTGATCGCGC GGCCCGACGG CCGGCAGGTG TGGGTCAACT TCGCGGTGCC CGACTACCAC
CGCGTGCAGG TCATCGACAC GCCGAGCCAG CGCATCGTCA AGACGATCGA ACCGGGCCGC
GCGGTGCTGC ACATGGAGTT CACGCCGCGT GGCGAGGCGG TGTGGATCAG CAGCCGCGAC
GACAACCGCG TCAGCGTGAT CGACACCCGC AGCTTCGACA CGCTGGCCAC GCTGTCGGTC
GACGCGCCGA GCGGCATCTT CTTCACCGCC CGCGCCGCGC GGCTCGGGTT CTGA
|
|---|
| Protein sequence | MKRRHLLAGL ATLPALSTLG LMTGCATAPQ RGTGDLGVIV ARASGRLAIV DTSARTLLGE
VAGLGDLSHA SVVFSRDGLH AYVFGRDGGL SKVDLLQRRL VARVMQAGNS IGGAISADGT
LVAAQNYTPG GVKVFDARTL TLLADIPAEY GAAKPSRVVG LVDLPGRRFA FSLFDADAIW
IADLSDTTHP KLTQLPGIGR QPYDALVTPD GRHYIAGLFG EDGLALVDLW AETPTARRIL
GGYGRGEQPL PVYKMPHLRG WAVAGRRAYL PAIGRHEVLV VDIETWAEVG RIPVAGQPVF
VIARPDGRQV WVNFAVPDYH RVQVIDTPSQ RIVKTIEPGR AVLHMEFTPR GEAVWISSRD
DNRVSVIDTR SFDTLATLSV DAPSGIFFTA RAARLGF
|
|---|
| |