| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1432 |
|---|
| Symbol | |
|---|
| ID | 6160273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1512287 |
|---|
| End bp | 1513846 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641664186 |
|---|
| Product | nitrogenase molybdenum-iron protein beta chain |
|---|
| Protein accession | YP_001790465 |
|---|
| Protein GI | 171058116 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | [TIGR01286] nitrogenase molybdenum-iron protein beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.880154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAAA ACGCCGACAA GGTCATCGAC CACGAAATGC TCTTCCGCGA GCCGGAGTAC
CAGGAGCTGT TTGCCTCCAA GAAGGCCGAA TTCGAGTTCA ACCATTCCGA CACCAAGGTC
GCCGAGATCC GCGACTGGAC CAAGAGCGCC GAGTACAAGG ACAAGAACTT CGCCCGTGAA
GCGCTGACCG TCAATCCGGC CAAGGCCTGC CAGCCGCTGG GTGCGGTGTT CGTGGCCAAC
GGTTTCCACA AGACCCTGAG CTTCGTGCAC GGTTCGCAAG GCTGCGTGGC CTACTACCGC
TCGCACTTCT CGCGTCACTT CAAGGAGCCG ACCTCGTGCG TGTCTTCCTC GATGACCGAA
GACGCCGCCG TGTTCGGTGG CCTCAACAAC ATGATCGACG GCCTGGCCAA CTCGTACAAC
CTGTACAAGC CCGACATGAT CGCGGTGTCG ACCACCTGCA TGGCCGAGGT CATCGGTGAC
GACCTGAACG CCTTCATCAA GACCTCGAAG GAAAAGGGCA GCGTGCCGGC CGAGTTCGAC
GTGCCTTTCG CGCACACGCC GGCCTTCGTC GGCAGCCACG TGACCGGCTA CGACAACGCC
CTGCTCGGCA TCCTGCAGCA CTTCTGGGAC GGCAAGGCCG GCACGGCGCC CAAGCTCGAG
CGCGTGCCTG ACGAGAGCAT CAACTTCATC GGTGGCTTCG ACGGTTTCGT GGTCGGCAAC
ATGTTGGAGA TCAAGCGCAT CTTCGACCTG TTCGGTGCCG ACTACACCGT GCTGTGCGAT
CCGTCGGAGA CCTGGAACAC GCCCACCGAC GGCCAGTTCC GCATGTACGA AGGTGGCACC
ACCAAGGCCC AGGTCGAGCG TGCCCTGAAC GCCAAGGCGA CGATCGTCTT CCAGGAATAC
AGCTGCGAAA AGACCATCAA GTACCTGAAG GAAAAGGGCC AGGAAGTCGT GGTGCTCAAC
AGCCCCATCG GCGTGGCCGG CACCGATGCC TTCGTGATGG CCCTGTCACG CCTGACCGGC
AAGCCCGTGC CCGCTGTGCT GGAGAAGGAG CGCGGCCAGC TGGTCGACGC GATGGCCGAC
AGCCAGGCCC ACCTGCACGG CAAGCGTTAT GCGCTGTACG GCGATCCGGA CATGATGCTG
GGCCTGACCC AGTTCCTGCT TGAACTCGGT GCCGAACCGG CTCACGTGCT GGCTACCAAT
GGCAGCAACG AATGGGCCGC CAAGGTCCAG GCGCTGCTCG ATGCATCGCC CTACGGCGCG
GGCTGCAAGG TGTACCCGAA GCGCGACCTC TGGCACATGC GCTCGCTGCT GTTCACGGAG
CCGGTCGACT TCCTGATCGG CAACACCTAC GGCAAGTACC TCGAGCGCGA CACCGGCACG
CCGCTGATCC GCATGGTGTT CCCGATCTTC GATCGCCACC ACTACCACCG TTACCCGATC
TGGGGTTATG ACGGTGCGCT GCGCACGCTG ATCATGTTCC TCGACGAGTT CTTCGAGACG
CTGGACGCGA ACACCATCGT CCCCGGCAAG ACCGACTACT CCTACGACAT CATCCGATGA
|
|---|
| Protein sequence | MPQNADKVID HEMLFREPEY QELFASKKAE FEFNHSDTKV AEIRDWTKSA EYKDKNFARE
ALTVNPAKAC QPLGAVFVAN GFHKTLSFVH GSQGCVAYYR SHFSRHFKEP TSCVSSSMTE
DAAVFGGLNN MIDGLANSYN LYKPDMIAVS TTCMAEVIGD DLNAFIKTSK EKGSVPAEFD
VPFAHTPAFV GSHVTGYDNA LLGILQHFWD GKAGTAPKLE RVPDESINFI GGFDGFVVGN
MLEIKRIFDL FGADYTVLCD PSETWNTPTD GQFRMYEGGT TKAQVERALN AKATIVFQEY
SCEKTIKYLK EKGQEVVVLN SPIGVAGTDA FVMALSRLTG KPVPAVLEKE RGQLVDAMAD
SQAHLHGKRY ALYGDPDMML GLTQFLLELG AEPAHVLATN GSNEWAAKVQ ALLDASPYGA
GCKVYPKRDL WHMRSLLFTE PVDFLIGNTY GKYLERDTGT PLIRMVFPIF DRHHYHRYPI
WGYDGALRTL IMFLDEFFET LDANTIVPGK TDYSYDIIR
|
|---|
| |